Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi132g00053 ATGGACAACAATGATGACAAAATCATATTAGGCACACATGCGAGTCACCTTGTTATCTGTGCTGTTGCCACAATCTGTTTCGTTCTAGCAACAGTAGCATGTTATATCATTCTCTTCAGGTATTTCTATAGGTCTCCAAGAGTAGTACAACAGAGGAACAACAAGAGTGGTGGTGTGAAAGAGGAAATCCTCAACAAGATCCCAACTCTCCCATTCTCAACCCAAAAATTTGATGTCTTTCGTTTGGAACAAAATGAATGCTCCATTTGCCTTGGTGAATTGGAGGATGGAGAGCCAGTGAGGTTGTTACCTGCTTGTAAACATGCCTTCCACCCTTTTTGCATTGAATCATGGTTCATTGAACATGCAAATTGCCCTGTTTGTCGTTCACCGATTACTTGTGATTGTGAATTAAGGCTTCCAATAGCTTTAGAAAATGATCATGGTGGTGGAGAACGGAGGATCTCGTCAAATGATGATCATCATCATCGGTTAATCAATGGTGATGTGAGTGATTCCACTTCCACCTCCTCAAGATTTCAACGACCACACCGTTTATTGCTTCACTCTGTCTCTTTCTCATCATCACGCATTCAGCAAAAGCCACGAGCTCTGGATAGTTGGTTGAACAGACATGCAAATGCAGAGGATGTGTTGAGAGGTAATAATGAATGA 675 0.4163 MDNNDDKIILGTHASHLVICAVATICFVLATVACYIILFRYFYRSPRVVQQRNNKSGGVKEEILNKIPTLPFSTQKFDVFRLEQNECSICLGELEDGEPVRLLPACKHAFHPFCIESWFIEHANCPVCRSPITCDCELRLPIALENDHGGGERRISSNDDHHHRLINGDVSDSTSTSSRFQRPHRLLLHSVSFSSSRIQQKPRALDSWLNRHANAEDVLRGNNE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi132g00053 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 134 IPR013083 -
Sebi132g00053 224 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Sebi132g00053 224 MobiDBLite consensus disorder prediction 151 178 - -
Sebi132g00053 224 SMART ring_2 87 128 IPR001841 -
Sebi132g00053 224 MobiDBLite consensus disorder prediction 151 168 - -
Sebi132g00053 224 Pfam Ring finger domain 85 129 IPR001841 -
Sebi132g00053 224 SUPERFAMILY RING/U-box 79 135 - -
Sebi132g00053 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 194 - -
Sebi132g00053 224 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi132g00053 Sebi-Chr132 883773 885130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi132g00053 15 132 C3H Transcription Factor Family AT3G10910 30.303 6.80e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi132g00053 - - aprc:113863869 192.586