Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi132g00020 ATGGACATGGATAGTGCACGTAGATCTTTAGATAGATCGAGAGAACCAGGCTCCAATAAGCCAAGATTGATTGACGAGCTGGACAGAGGGTTGAATACACCAGGCTCCAAGAAGCCAAGATTGATCGACGAGCTGGATAGAGTGTCGAATACACGACCATTTCCTCAGAGACAAGCTGGTTTTCGAACAAATGACAGAGACTCTGAAAGCAGTGATTCTGGTCGCGATGTTGGGTACCAGCCACAGCCACCGCCTCACCAAGAACTCGTGATTCAGTATAAGACCGCACTTGCTGAGCTCACTTTCAACTCAAAGCCAATAATTACCAATTTGACTATAATTGCCGGAGAGAACCTGTCTGCTGCCAAGGCAATTGCTGGGACTGTTTGTACTAACATTCTAGAGGTTTCTGATGTTCTAATAACTGGTCTTATTTCTTGTTATGCGATGACTGAGCCATTTATAAATTGTATTGGTGTTGTGCCAACTGAACAAAAGCTGCCATCACTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGAGGGATTATATAAAATACTTTGCTGCCAGGCTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCAATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTATTTCCTCCTCAGACCCTTCAGGTAATTGAGAAGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCTACACTCAGGAGTGATTCGCAGTCACAACGCCCGCCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTAGTTAATGATACCACTGGAGCTATTTTAAACTCAAATGAGGACTCAGAAAGGCCAGATAGAGCTTTGGGTGCTGCACGGCCATGGCTGGATCCTAGGGTTAGCATGCATAATAATCAGCACACTCATAGAGATGCATTAAACGATTCTGTTCCTGAAAAGAGAATTGGTGGATCCTATGGAGGCAATGAATATAGTTCTGGTATTTCAAGTAATTTGGGCTCAGGAGTTGGAAGAACTGGAAGTAGGATCATTGGTGGTGTCGCTGAGACCATATCTGGGCAAACAAATGGTTTCAGTCTCAAACATAGTTTTTCTAATCATGAAGCACCAAAGTCCATGAATTCAGATGCACATCGTCAGCCAACACAAATAGTAACTAACATAAGGAGCAGTGGGATGTCAAATAACTGGAAAAATTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGAACTCTGGTTTGACTGATCATGGACCCAATGTCTCTAGCAATTTGAGCACAGACCCATGGATGGCTGATGATGAAAATATGGAAGGTGAAGATCACCTCCAAATCACACACCCTTTTGGGGCAAAGGTTGGTAGAGAAACATCCACCGTGAAGAAACAACTACCTGCATTTGGGGGCCATTCATCATTATCATGGCAATTGCAGAAGCAGCACTCAAGTGATAAGTTGAATCTGAAGCCGGGTCACTCGGAAGGGTTTGGTTCCGCTCTTAGTGGCTTACCCGGTAATACATATTCTTCAGATATCAGGATGAGGAATCGGTCTTTTATGCCAAATGCAACAATAGGAATGGCCAAAATTATGGGACAGCAGCAATTTGATTCTGGTGGAGCTGTATCCCCTTCTGGGCAGTCACCTTTGCGACAACAGTCTCCGTCCCTGTCAGTATCCATACACCACCCTCATTCAGTGCAAAATTTGGCTGAGAAAGATTGTCGCTTGACTCCTAAAACATCTCAATTTTTGGGTGGTCTGCAAAACCAATATATTAGAGATCCCTCACCTGCCCTTCTTCCCAATGTTCAGCCAAGGCTTCAGCAACAGCAGCCTGGCCCTTCTCAGACTGATGCTACTGTTAAAACTAAGAAGCCGCCCCAGTCTAAAGTTTCTTTGGCCAGAGAAACTTCAGAAAAGTCAACCACAAATAGTCTTTCAACTGCATCTATGAAGAGTGGAGTCATCTCCAAAAAATCAATTACCAGTAGTCTTCCTACTACAAGAAGTCTGGATGCAAGGAATCTCCCATCTCAATCAGGGGTTCGGCCTACTAGGTCAGGTGGCCATTCCCCTACCACATTAATTTCTTCAGGGTCTACAGCATCACCATCTTCATCAGGTCCTCGGAATGATTATTCATCTACTCTGCTAAAAGTACCTAAAGGAAAGGCGGGACAATCACAAAGGGATTCTACTAAACCACCTGCATCCTCTAAAGTGAGCAGTGCCTCAGCTCCGAGCTCAAATGTCACCAATAAAAATACCTCAAATCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAAGGTTTGATATCTGCAGAAGCAGAGTCGGCAAGTACAGTACCAAATGATGCTGCTAAAGCCTCTCTTGCCTTATCTCAATCAACAAGCACAGAAATAAAAGATCTCATTGGCTTTGATTTTAAACCTGATGTAATTCGAGAAATGCATCCACATGTAATCAGGGAATTATTGGATGAACTCCCTCATCATTGCAGAATTTGTGGTGTTAGGCTTAAACAGAAAGAACAATTCAATAGACATTTAGACTGGCATGCCGCAAGAGAAAGAGAACAAAATGGTCTGATTAGGATGTCAAGAAGATGGTATGCAGAGTCAAATGACTGGATTGCTGGCAAAGCTGAATATTCATCGGAGCGTGAGACTTCTGATTCTGTAGATGTATATGACAAAACATCAGACACGAGTCAATCGGATACTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGGGAGCTATTTGAAGATGTGTACTGTCAGGAAACGGACCAGTGGATGTTCAAAGGGGCTGTTTACATGAACCACTCAGATAGCAATAGTGGGGTGGAAAGTGGAAATGTGGGCCCCATCATTCATGCTAGATGCTTATTATCCAGTGTCACCAAAATGGATCATGATTAA 3015 0.4345 MDMDSARRSLDRSREPGSNKPRLIDELDRGLNTPGSKKPRLIDELDRVSNTRPFPQRQAGFRTNDRDSESSDSGRDVGYQPQPPPHQELVIQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCTNILEVSDVLITGLISCYAMTEPFINCIGVVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVNSSMRHLFGTWRGVFPPQTLQVIEKELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVNDTTGAILNSNEDSERPDRALGAARPWLDPRVSMHNNQHTHRDALNDSVPEKRIGGSYGGNEYSSGISSNLGSGVGRTGSRIIGGVAETISGQTNGFSLKHSFSNHEAPKSMNSDAHRQPTQIVTNIRSSGMSNNWKNSEEEEFMWDEMNSGLTDHGPNVSSNLSTDPWMADDENMEGEDHLQITHPFGAKVGRETSTVKKQLPAFGGHSSLSWQLQKQHSSDKLNLKPGHSEGFGSALSGLPGNTYSSDIRMRNRSFMPNATIGMAKIMGQQQFDSGGAVSPSGQSPLRQQSPSLSVSIHHPHSVQNLAEKDCRLTPKTSQFLGGLQNQYIRDPSPALLPNVQPRLQQQQPGPSQTDATVKTKKPPQSKVSLARETSEKSTTNSLSTASMKSGVISKKSITSSLPTTRSLDARNLPSQSGVRPTRSGGHSPTTLISSGSTASPSSSGPRNDYSSTLLKVPKGKAGQSQRDSTKPPASSKVSSASAPSSNVTNKNTSNPIANLLSSLVAKGLISAEAESASTVPNDAAKASLALSQSTSTEIKDLIGFDFKPDVIREMHPHVIRELLDELPHHCRICGVRLKQKEQFNRHLDWHAAREREQNGLIRMSRRWYAESNDWIAGKAEYSSERETSDSVDVYDKTSDTSQSDTMVVADENQCLCVLCGELFEDVYCQETDQWMFKGAVYMNHSDSNSGVESGNVGPIIHARCLLSSVTKMDHD 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi132g00020 1004 ProSiteProfiles CID domain profile. 85 238 IPR006569 -
Sebi132g00020 1004 SUPERFAMILY ENTH/VHS domain 157 235 IPR008942 -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 1 47 - -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 751 783 - -
Sebi132g00020 1004 CDD CID_Pcf11 90 227 IPR047415 -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 560 584 - -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 271 296 - -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 1 85 - -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 631 783 - -
Sebi132g00020 1004 Pfam CID domain 95 228 IPR006569 -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 631 739 - -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 245 304 - -
Sebi132g00020 1004 ProSitePatterns Zinc finger C2H2 type domain signature. 859 879 IPR013087 -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 245 262 - -
Sebi132g00020 1004 SUPERFAMILY ENTH/VHS domain 85 136 IPR008942 -
Sebi132g00020 1004 MobiDBLite consensus disorder prediction 495 530 - -
Sebi132g00020 1004 Gene3D - 82 235 IPR008942 -
Sebi132g00020 1004 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 61 994 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Sebi132g00020 1004 SMART 558neu5 88 235 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi132g00020 Sebi-Chr132 389743 396261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi132g00020 776 993 C2H2 Transcription Factor Family AT4G04885 32.273 2.94e-33 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi132g00020 CID 4.1e-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi132g00020 K14400 - gmx:100788958 1198.34