Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi132g00019 ATGGACATGGAGAGTGCACGTAGATCGCTGGAAAGATCTAGAGAACCGGGCTCCAAGAAGCCCCGATTGATCGACGACCTGGACAGAGGGTCGAATACACGACCATTTCCTCAGAGACAAGCTGGGTTTCGAACAAATGACAGAGACTCTGAAAGCAGCGATTCTGGTCGTGTTGTTGGGTACCAGCCACAGCCACCGCCTCACCAAGAGCTCGTGACTCAGTATAAGACCGCACTTGCTGAGCTCACTTTCAACTCAAAGCCAATAATTACCAATTTGACTATAATTGCTGGAGAGAACCTGTCTGCTGCCAAGGCAATTGCTGGGACTGTTTGTGCTAACATTCTAGAGGTTCCAACTGAACAAAAGCTGCCATCTCTTTATCTCTTGGACAGTATTGTTAAGAATATTGGGAGGGACTATATAAAATACTTCGCTGCCAGGCTACCTGAGGTATTCTGTAAGGCATACAGATTGGTTGATCCTTCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGAGTATTTCCTCCTCAGACCCTTCAGGTAATTGAGATGGAACTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCTGCATCTGCTACACTCAGGAGTGATTCACAGTCACAACGCCCGCCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTAGTTAATGATGCAACTGGAGCTATTTTAAACTCAAATGAGGACTCCGAGAGGCCAGATAGAGCTTTGGGTGCTGCACGGCCATGGCTGGATCCTAGGATTAGCATGCATAATAATCAGCGCACTCATCGAAATGAATTTAACGATTCTGTTCCTGAAAAGAGAATTGGTGGATCCTATGGAGGCAATGAATATAGTTCTGGTATTTCAAGTAGTTTGGGCTCAGGAGTTGGAAGAACTGGAAGTAGGCTCATTGGTGGTGTTGCTGAGACCATATCTGGGCAAAGAAATGGTTTCAGTCTCAAACATGGATCTTCAAATCACGAAGCACCGAAGTCCATGAATTCAGATACACATCGTCCGCCAACACAAACAGTAACTAACATAAGGAGCAGCGTGTTGTCAAATAACTGGAAAAATTCTGAGGAAGAGGAGTTCATCTGGGATGAGATGAACTCTGGTTTGACTGATCATGAACCCAATATCTCTAGCAATTTGAGCACAGACCCATGGATGGCTGATGATGAAAATTTGGAAGGTGAAGATCACCTCCAAATCACACGCCCTTATGGGGCAAAGGTTGATAGAGAAACATCCACTGTTAAGAAACAACTACCTGCATTTGGGGGCCATTCATCATTATCATGGCAATTGCAGAAGCAACACTCAAGTGATAAGTTGAAGCTGAAGCCAGGTCACTCAGAAGGATTTGTTCCCGCTCTTAGTGGCTTACCCGGAAATACATATTCTTCAGATGTCAGTATGAGGAATCGGTCTTTTATACCAAATGCAGCAATAGGAATGGACAAAATTATGGGACAGCAGCAATTTGATTCTGGGGGAGCTGAATCCCCTTCTGAACAGTCACCTTTGCGACAACAGTCTCCATCCCTGTCAGTATCCATACACCACCCTCATTCAGTGCAAAATTTGGCTGAGCAAGATTGTCACTTGACTCCTAAAACATCTCAATTTTTGGGAGGTCTGCAAAACCAATGTATTAGAGATCCCTCACCTGCCCTTCTTCCAAATGTTCAGGCTGGTTACTTAAGAAAATCACAGGAAAAGGACACGCAGGGTCCATTATCTTCTGTACCTTCTTTTCAGCCAATGCTTCAGCAACAGCAGCTTGGTCCTTCTCATATTGATGCTACTGTTAAAACTAAGAAGCCACCCCACTCTAAAGTTTCTATAGCTAGAGAAACTTCAGAAAAGTCAGCCACAAATAGTCTTTCAACTGCATCTGTGAAGAGTGGAGTCATCTCCAAAAAATCAATTACCAGTGGTCTTCCTACTACAAATAGTCTGGATGCAAGGAATCTCCCATCTCAGTCAGGTGGTCGGCCTACTAGGTCTGGTGGTCGTTCCCCTACCGCTATAATTTCTTCAGGGTCTACAGCATCACCATCTTCATCAGTTCCTCTGAATGATTATTTATCTACTCTGCCAAAAATACCTCAAGGAAAGGCTGGACAATCACAAAGGGATTCTACTAAACCACCTGCATCTTCTAAAGTGAGCAGTCCCTCAGCTCCGAGCTCAAATGTCACCAATAAGAATACCATAAACCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAAGGTTTGATATCTGCGGAAGCAGAGTCGGCAAGTACAGTACCAAGTGAGATTCTGATGCAGTTGGAAGACCATACTGAAAGCATTACCACTAGTTGCTCTTTGCCGGCTGCTTCAGTTCCTGGTTCTGCAGCTGTTCCAGTACCATCTTCCAGAGATGAGGTAGATGCTGCTGCAAAAGCCTCTCTTGCCTTATCTCAATCAACAAGCACTGAAATAAAAAATCTCATTGGCTTTGATTTTAAACCTGATGTGATTCGAGAAATGCATCCACATGTAATCAGGGAATTATTGGATGATCTCCCACATCATTGCAGAATTTGCGGTGTTAGGCTTAAACAGCAAGAACAGTTTAATAGACACTTGGAGTGGCATGCCACAAGAGAAAGAGAACAGAGTGGTCTAATTACGGCGTCAAGAAGATGGTATGCAGAGTCAAATGACTGGATTGCTGGCAAGGTTGAATATCCATCTGAGCCTGAGATGTCTGATTCTGTGGATGTGTATGACAAAACAACAGACACGAGTCAATTTGATACTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGCGAGCTATTTGTAGATGTGTACTGTCAGGAAACGGACCAGTGGATGTTCAAAGGGGCTGTTTACATGAACAACTCAGATAGCAATCGTGAGATGGAAAGTATAAATGAGGGGCCTATCATTCATGCTAGATGCTTATCAGAGAACTCAATATCCAGTGTTACCAAAACGGTAAGGCTTATTATCTGA 3093 0.4391 MDMESARRSLERSREPGSKKPRLIDDLDRGSNTRPFPQRQAGFRTNDRDSESSDSGRVVGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAGTVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRLVDPSVHSSMRHLFGTWRGVFPPQTLQVIEMELGFTPAVNGSASASATLRSDSQSQRPPHSIHVNPKYLERQRLQQSSRTKGVVNDATGAILNSNEDSERPDRALGAARPWLDPRISMHNNQRTHRNEFNDSVPEKRIGGSYGGNEYSSGISSSLGSGVGRTGSRLIGGVAETISGQRNGFSLKHGSSNHEAPKSMNSDTHRPPTQTVTNIRSSVLSNNWKNSEEEEFIWDEMNSGLTDHEPNISSNLSTDPWMADDENLEGEDHLQITRPYGAKVDRETSTVKKQLPAFGGHSSLSWQLQKQHSSDKLKLKPGHSEGFVPALSGLPGNTYSSDVSMRNRSFIPNAAIGMDKIMGQQQFDSGGAESPSEQSPLRQQSPSLSVSIHHPHSVQNLAEQDCHLTPKTSQFLGGLQNQCIRDPSPALLPNVQAGYLRKSQEKDTQGPLSSVPSFQPMLQQQQLGPSHIDATVKTKKPPHSKVSIARETSEKSATNSLSTASVKSGVISKKSITSGLPTTNSLDARNLPSQSGGRPTRSGGRSPTAIISSGSTASPSSSVPLNDYLSTLPKIPQGKAGQSQRDSTKPPASSKVSSPSAPSSNVTNKNTINPIANLLSSLVAKGLISAEAESASTVPSEILMQLEDHTESITTSCSLPAASVPGSAAVPVPSSRDEVDAAAKASLALSQSTSTEIKNLIGFDFKPDVIREMHPHVIRELLDDLPHHCRICGVRLKQQEQFNRHLEWHATREREQSGLITASRRWYAESNDWIAGKVEYPSEPEMSDSVDVYDKTTDTSQFDTMVVADENQCLCVLCGELFVDVYCQETDQWMFKGAVYMNNSDSNREMESINEGPIIHARCLSENSISSVTKTVRLII 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi132g00019 1030 SMART 558neu5 70 192 IPR006569 -
Sebi132g00019 1030 CDD CID_Pcf11 72 191 IPR047415 -
Sebi132g00019 1030 ProSiteProfiles CID domain profile. 67 195 IPR006569 -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 202 260 - -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 336 365 - -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 726 760 - -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 228 253 - -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 1 29 - -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 202 219 - -
Sebi132g00019 1030 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 35 1018 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 517 542 - -
Sebi132g00019 1030 SUPERFAMILY ENTH/VHS domain 67 190 IPR008942 -
Sebi132g00019 1030 Gene3D - 64 192 IPR008942 -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 641 718 - -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 515 542 - -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 1 68 - -
Sebi132g00019 1030 FunFam polyadenylation and cleavage factor homolog 4 64 192 - -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 626 640 - -
Sebi132g00019 1030 MobiDBLite consensus disorder prediction 624 760 - -
Sebi132g00019 1030 Pfam CID domain 76 185 IPR006569 -
Sebi132g00019 1030 ProSitePatterns Zinc finger C2H2 type domain signature. 879 899 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi132g00019 Sebi-Chr132 376777 384481 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi132g00019 60 395 C2H2 Transcription Factor Family AT4G04885 39.886 4.24e-57 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi132g00019 CID 6e-13 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi132g00019 K14400 - gmx:100788958 1280