Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi132g00003 ATGGGTTCATTCTCTGGCACTTGTGAAATAGTTGAAGCAAGGGAGGAGCTAAGTACAGGGAAATCTGTAAGAGTTTATCAGTCAAATTCTCAGTATAACAAGTCTGAGAAAAATCAGAAGCCTTCAGTGCTGAACCTGGGATACAAGGATAATCTAGATGATGATATTAATAAGCTGTTTGAATCAATTGCTATTAAATCTGCATCAAGGGATTTGAGCCTTTTACAAGATGGTACAAGCCCTAGGCTGAAAATTGCATTAAAAAAGCCAATGACGACGGGTGTCCCTCGGTCCCCACGAGTCGGGACTTCTGAGCCTGTTAATTTGAAGCAGGCATTGAGAGACCTTTGTATATCTAAGGCATCAGAAATGGCTGCTATGAAACGATTATCAAAGTCAACAGCTTCTCCAAGAATATCAGAAGCTGGGAAGATACAGACACTGTACGGTTCAGTTGTAGCTGAAACCAGTCAATCTGGACCTTCTTTTGTTGAGAGTAAGGGGCATAGAATGGAAAAATCTCTAGTGCAAGAAAAAAGCAAGTCACCCTCATTGGAGGAAACATCTCACTCTCATCAAACTGACCAAATCACATCATCAAGCCAAACTCTTCATTCTTCTCGGGGAAATCCTGTTGCAACTACTCATGATTCAGCATGTTCATCGAGTAAAGCTGGGGTTCAATCACAGCGTGTGGTACCTGTTCAAGCAGAAAAACAAACATCTGCATCTTCTCCATCTCTTTATAATACATTTGGAAGCAAATCAGAATTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTAGGAAATAAAGCATCCGTGTCAAATACTGGGCGGAAAGGTAGGTCTCAAACAGTGTCTTCTTCATCTACTTCTGTAAATGGCAGCAAAGTTAACAAACTGCCACGCCATGCCTCCCGTACAGTTAAAACGGTCATCAAGAACAAGAATCTAAGTAAGAAGAAAATAAAGGAGGATTCAGGTTCTGCCTCATGTGATCCTACATCCAATGAAGTGAATAAGTCAGTTCCTGCCACAGCTCAGCTGGTTTGTGAGAGATGTAGGTGTGCTTTAGAAAATACAAGGGAAGAAAAAAACAAAGATATTATAGCATCAGACTCTACCAATCCTGCAAATGGAGTAAACTTGAGTAATGTGCACTCTGGTCCAAATAAACCTGATTTGGCATCAACTGGTGGTAATAAAAGCAAAGCAGTTGCAAAAGTGAAGAAGAACACCAAGTTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGTCAAGGTGAGTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATTTGAGTGGCTCAAGTTGTGGCTCCAGGCCTCACATGTCAAAGGATGTTAGGTGGGAAGCCATTCGACATGCTCAAATGCAGTATGGAGTCTTGAGCTTGAGACACTTTAATCTTTTGAAGAAACTTGGTTGTGGAGACATTGGGACTGTATACCTTGCTGAACTAATTGGCACTAGTTGCTTGTTTGCTATTAAGGTCATGGACAACGAATTTTTGGCAAGAAGGAAGAAAATGCCTAGGGCTCAAACTGAAAGAGAAATATTAAGGATGCTGGATCATCCATTTCTTCCCACACTGTATGCGCAATTTACATCAGATAATCTGTCATGTCTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGAAGTTTTTCGGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTTCTACTCGCTTTGGAGTACTTGCACATGCTCGGAGTTGTTTACCGTGATTTGAAACCTGAAAACATTCTTGTTCGGGAAGATGGCCACATTATGCTCACAGATTTTGATCTGTCACTGAGGTGTGCTGTTAGCCCAACCCTCCTGCAATCATCTTCTGATGTTGACCCTGCAAAAATTTCTGGTCTTAGTGCACAATCAAGTTGTATCGAGCCATTCTGCATTGAACCCTCATGTCAAGTTCCATGCTTCAGCCCTAGATTCTTACCTGCTGCTGCAAAAGCAAGGAAATTAAAAATTGATCCTGCTGCCCAGGTCAGATCACTGCCACAGCTTGTGGCCGAGCCCACTGATGCAAGATCAAACTCATTTGTAGGTACACACGAATACTTGGCCCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGCGTTTTCCTTTATGAGCTTTTGTATGGTAGAACACCCTTTAAAGGTTGTAACAATGAAGAAACATTAGCGAACGTGGTGTTGCAAGGTCTTAGATTCCCTGATAGTCCATTTGTTAGTTTCGAAGCGAGGGATCTGATTAGAGGGTTGTTGGTGAAAGAACCTGAGAACCGTTTGGGTTCAGAGAAAGGTGCTGCTGAGATTAAACAGCACCCCTTCTTCGAGGGCCTTAACTGGGCCTTAATTCGTTGTGCTATCCCACCAGAACTTCCAGAGTTTTGTTATTATGAAGTTTCAGACATGACCTTACAAGGCAAGGGAGCTAAGTATTTAGAGTGTAAAGTAGGAGAGCATGTGGAATTCGAGTTGTTTTAA 2586 0.4215 MGSFSGTCEIVEAREELSTGKSVRVYQSNSQYNKSEKNQKPSVLNLGYKDNLDDDINKLFESIAIKSASRDLSLLQDGTSPRLKIALKKPMTTGVPRSPRVGTSEPVNLKQALRDLCISKASEMAAMKRLSKSTASPRISEAGKIQTLYGSVVAETSQSGPSFVESKGHRMEKSLVQEKSKSPSLEETSHSHQTDQITSSSQTLHSSRGNPVATTHDSACSSSKAGVQSQRVVPVQAEKQTSASSPSLYNTFGSKSELPKNASSPKKLGNKASVSNTGRKGRSQTVSSSSTSVNGSKVNKLPRHASRTVKTVIKNKNLSKKKIKEDSGSASCDPTSNEVNKSVPATAQLVCERCRCALENTREEKNKDIIASDSTNPANGVNLSNVHSGPNKPDLASTGGNKSKAVAKVKKNTKLKEQLEFSQSSKSSQGEYSSSTSTSDESNLSGSSCGSRPHMSKDVRWEAIRHAQMQYGVLSLRHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLQSSSDVDPAKISGLSAQSSCIEPFCIEPSCQVPCFSPRFLPAAAKARKLKIDPAAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGCNNEETLANVVLQGLRFPDSPFVSFEARDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAIPPELPEFCYYEVSDMTLQGKGAKYLECKVGEHVEFELF 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi132g00003 861 FunFam serine/threonine-protein kinase D6PK-like 563 630 - -
Sebi132g00003 861 FunFam serine/threonine-protein kinase D6PK-like 706 829 - -
Sebi132g00003 861 CDD STKc_phototropin_like 477 829 - -
Sebi132g00003 861 PANTHER FLIPPASE KINASE 1-RELATED 207 830 - -
Sebi132g00003 861 MobiDBLite consensus disorder prediction 303 317 - -
Sebi132g00003 861 FunFam Serine/threonine-protein kinase D6PK-like 477 562 - -
Sebi132g00003 861 MobiDBLite consensus disorder prediction 367 454 - -
Sebi132g00003 861 MobiDBLite consensus disorder prediction 418 452 - -
Sebi132g00003 861 Gene3D Transferase(Phosphotransferase) domain 1 563 821 - -
Sebi132g00003 861 Pfam Protein kinase domain 480 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi132g00003 861 Pfam Protein kinase domain 708 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi132g00003 861 MobiDBLite consensus disorder prediction 158 339 - -
Sebi132g00003 861 SMART serkin_6 479 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi132g00003 861 SUPERFAMILY Protein kinase-like (PK-like) 454 834 IPR011009 -
Sebi132g00003 861 MobiDBLite consensus disorder prediction 166 188 - -
Sebi132g00003 861 MobiDBLite consensus disorder prediction 189 301 - -
Sebi132g00003 861 ProSiteProfiles Protein kinase domain profile. 479 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi132g00003 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Sebi132g00003 861 MobiDBLite consensus disorder prediction 371 398 - -
Sebi132g00003 861 Gene3D Phosphorylase Kinase; domain 1 479 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi132g00003 Sebi-Chr132 48806 52221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi132g00003 1 861 AGC Kinase Gene Family AT3G52890 52.697 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Sebi132g00003 Pkinase 5.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi132g00003 - - gmx:100792120 1352.42