Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00140 ATGGCTGCAATTCATCAACATTGTAGCTTCTCGTTGATCACATTTACATGGGTGCTAGCAATCATAGCAAAGCCTGCGCTAGTAGCAGGCAGATTTCAACCCAGTCAATGGACTCTTGCACATGCCACATTTTATGGTGATGAGACTGCTTCTGCCACCATGGGAGGAGCATGTGGATATGGAAATTTGTTCCTGAACGGTTACGGAACAGATACGGCGGCTTTGAGCTCAACATTGTTCAATAATGGGTATGCATGTGGGACTTGTTATCAAATAAAATGCGTCCAATCGAGTGCATGCTACACCAATGTGCCTTACACCACAGTGACTGCAACCAATCTTTGTCCTCCTAATTGGGCCGAGGCCTCTGATAATGGTGGCTGGTGCAACCCACCACGTGCACATTTTGACATGTCCAAGCCTGCCTTCATGAAAATTGCACAGTGGAAAGCTGGCATTGTCCCTGTTATGTACCGCAGAGTACCATGTGTAAGGAGTAGAGGGCTTCGATTCTCTTTCCAAGGAAATGGGTATTGGTTATTAGTGTACGTGATGAATGTGGGAGGTGGAGGAGATATTGCCAACATGTGGGTGAAAGGAAGCAGAACAGGGTGGATTAGCATGAGCCACAATTGGGGGGCTTCTTACCAGGCATTTGCAACACTAAGTGGCCAAGCTATTTCTTTCAAGATTACTTCCTACACAACCAGAGAAACTATAATAGCATGGAATGTTGCTCCTACCAATTGGGGTGCAGGACTAACTTATTCCACCAATGTTAACTTCCATTAA 792 0.4558 MAAIHQHCSFSLITFTWVLAIIAKPALVAGRFQPSQWTLAHATFYGDETASATMGGACGYGNLFLNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSSACYTNVPYTTVTATNLCPPNWAEASDNGGWCNPPRAHFDMSKPAFMKIAQWKAGIVPVMYRRVPCVRSRGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLSGQAISFKITSYTTRETIIAWNVAPTNWGAGLTYSTNVNFH 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00140 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Sebi131g00140 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Sebi131g00140 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 168 IPR007112 -
Sebi131g00140 263 CDD DPBB_EXPA_N 36 163 - -
Sebi131g00140 263 Gene3D - 169 263 IPR036749 -
Sebi131g00140 263 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Sebi131g00140 263 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Sebi131g00140 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Sebi131g00140 263 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Sebi131g00140 263 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Sebi131g00140 263 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Sebi131g00140 263 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Sebi131g00140 263 PANTHER EXPANSIN-A15 16 258 IPR002963 GO:0009664
Sebi131g00140 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Sebi131g00140 263 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Sebi131g00140 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Sebi131g00140 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Sebi131g00140 263 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Sebi131g00140 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Sebi131g00140 263 Pfam Lytic transglycolase 72 158 IPR009009 -
Sebi131g00140 263 Gene3D - 23 163 IPR036908 -
Sebi131g00140 263 SMART dpbb_1 72 158 IPR007112 -
Sebi131g00140 263 SUPERFAMILY PHL pollen allergen 167 257 IPR036749 -
Sebi131g00140 263 SUPERFAMILY Barwin-like endoglucanases 36 186 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00140 Sebi-Chr131 1781266 1783292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00140 1 263 Expansin Gene Family AT1G12560 64.773 1.68e-124 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00140 - - gmx:100781459 505.368