Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00122 ATGAAGTTTTCAGTGAACTTTGCAGCCTTGCAACTGCTTGTGAGGAGTGGGGATTTTTTCAGAGAAGGGTCCGAGAAGAATAATGGTGGTGGGGTGAGTTTGAAAATGAGGGTTCCAAAAGCTGAGGTGGAGAAGCTGATCAAAAGCAACAAAGATGAAGCTGAACCTTCAAAGAGGATTATGAGTCTGCAAAAAGGCATGCGAGGCAAAACACGCCAAATTTGGCTCATTAATTCCCTAATATCAAAGTTCTACTTAGCTTTAGGGTTCAAGCTACCCTACTGCAGAAAGTCTAGGGTTTCACAAAATCGTGGTCTCGGCAAAACCCTAATCAGAAGGCGCGCAGCTCCAGCTCCAGCTCCAGCAACCATGGGACGTATGCACAGCAGTGGTAAGGGTATATCCTCTTCTGCTCTTCCATACAAGAGGACACCTCCAAGCTGGCTCAAGATCTCTTCCCAAGATGTTGAAGAGAATATCTGCAAGTTCGCGAAGAAGGGTTTGACGCCATCTCAGATCGGTGTCATTCTTCGAGATTCTCACGGAATCGCTCAGGTTAAGAGCGTCACTGGCAGCAAAATCCTTCGCATCCTCAAAGCTCACGGACTTGCGCCTGAAATTCCAGAGGATCTGTACCATTTGATCAAGAAGGCAGTTTCAATTAGGAAGCATTTGGAGAGGAACAGAAAGGACAAGGACTCCAAGTTTAGGTTGATTCTTGTGGAGAGCAGAATCCACCGACTTGCTCGCTATTACAAGAAGACTAAGAAGCTCCCACCAGTCTGGAAGTAG 792 0.4646 MKFSVNFAALQLLVRSGDFFREGSEKNNGGGVSLKMRVPKAEVEKLIKSNKDEAEPSKRIMSLQKGMRGKTRQIWLINSLISKFYLALGFKLPYCRKSRVSQNRGLGKTLIRRRAAPAPAPATMGRMHSSGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00122 263 ProSitePatterns Ribosomal protein S15 signature. 221 251 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sebi131g00122 263 PANTHER RIBOSOMAL PROTEIN S15P/S13E 124 263 IPR023029 -
Sebi131g00122 263 FunFam 40S ribosomal protein S13 206 263 - -
Sebi131g00122 263 Pfam Ribosomal S13/S15 N-terminal domain 124 183 IPR012606 GO:0003735|GO:0005840|GO:0006412
Sebi131g00122 263 Gene3D - 158 205 - -
Sebi131g00122 263 CDD Ribosomal_S15p_S13e 193 263 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sebi131g00122 263 MobiDBLite consensus disorder prediction 117 136 - -
Sebi131g00122 263 SMART Ribosomal_S13_N_2 124 183 IPR012606 GO:0003735|GO:0005840|GO:0006412
Sebi131g00122 263 SMART Ribosomal_S15_2 193 263 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sebi131g00122 263 Pfam Ribosomal protein S15 197 257 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sebi131g00122 263 SUPERFAMILY S15/NS1 RNA-binding domain 189 262 IPR009068 -
Sebi131g00122 263 Gene3D - 206 263 - -
Sebi131g00122 263 Hamap 30S ribosomal protein S15 [rpsO]. 126 263 IPR023029 -
Sebi131g00122 263 FunFam 40S ribosomal protein S13 158 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00122 Sebi-Chr131 1546598 1550441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00122 124 263 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 92.857 4.82e-93 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00122 K02953 - qsa:O6P43_029937 278.485