Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00110 ATGGCAGATGACGAAGGAAGTGCATCCAGGAAGCGAAGGACCCGAGGACCTGAGGCCACCGCCCGCAGCCAAGCCTTGGAGCGCCTCAAGGCCCGCCTTGGCGGTGGTCGCAGATCTGACCCCGACGGACCCCAAATCAGGTTAGAAAACCCTATCTATGATACAGTTCCCGAGGACGAGTACAACGCCCTCGTTGCCAAGCGCCGCGAACAAGCACGCTCCTTCATCGTCGACGATGACGGTCTCGGTTACGGTGACGGAGGCGAGGAAGAGGATTGGTCCAAAGCTGGCTTCACCCTCTCCTCCGACGAATCCGACGGCGAATCGACGAAGCCCAAGCGGAAGAAAGATCCTCAGCCCAAACGGCAATCTTCTTCCTCTTCTGCGCTCTCAGCCGCCGCCGCCATGATGGGCGCGCAGAGGTTGTCGTCCATGTTTACTTCCGCAGTTTTCAAGAAAAGCAGGGACGATAAGGCCTGTGACAGCATCGTCGATGATGTTATCGCGGAGTTCGCGCCGGATGAGACCGATAGACTGAGTCGGAGAAGGCTTCAAGTGGATTCGTCGTCTGGCGCCAACGACGCTCAACGGATTAAGCCATCTGTTGGTGATTCTATCAGAGGTTCTTCGTTGTCCAAAGCTTTTGCAAATGGTGACGCTGAACCGGTTAGGGTTTTTCAGAACAATGGATGCGACTTGGGATTAGAGCAAAAGTGCGAAGCGGAAGTGAATGAAAATGTAAGTTCGGAAAATGGCCAGGTACCAGTAGAGCAATCTAATGACTGCCCAAGTAATGAGGATTTAGTTGAGGAGAAAGTGGCGAAGGACGTTGAAATAGAAGTGAAACAAGATGCGAAAAAGGAAGTGTTCACTTTGAATGCCAAAGTTACAAAAGAGGAGGAGGATCCAGCATTGTGTGCGACTGCTGGTTGGCAAGCAGCGAAGAGTGGTGCCGGCGGAGGAGTGGAGATCAACGCTGCTGATTCGAAGGATGCTTCACATAGCCAACAACACACGGAGTTTAATCTTGAGACAGATGGATCGCTGCCTTTCTACATACTAGATGCCCACGAGGAGTTTTATGGAGCCAATATGGGAACTCTATATTTGTTTGGGAAGGTCAAAACAGGGAATTTGTATCAGAGTTGCTGTGTTGTTGTGAAGAACATGGAGAGGTGTGTATATGCAATTCCAAGTCGCCCTTTGCATTACACTGATGAGATGGTGAATCTTGAGAAAGATGTCCAAGAGTCTCGAATTTCTCCTCAAGATTTCCGTAAAAAGCTGCATGATATGGTATCTGATATAAAGAATGAGATAGCAAAACATCTGGTGGATCTGAGCGTTTCTACCTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGAACGGTCTGAAATTCCTACCGGTGAAAATTATGTGGTGAAAATAAATTACCCATTCAAGGATCCAGTACTTCCAGTAGACCTCAAAGGAGAAAGTTTCTGTGCTCTCCTAGGAACTCGTTGCAGTGCACTCGAGCTTTTTCTGATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAACTTTTCTACCCGCTCAGCTTCTCAAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTCGACTCTCCTAAAGACATAAGGATTTCTTCAAATTCCTCAAAATTCACTTTCGAGATTCCTCCTGTGGTTGTCACGGCGATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAAATTGTATCAGCATCAGTTGTCTGTTGCAATATGGTTAAGATTGACACTCCTATGTTGGCTTCAGAGTGGAAGAGACCTGGAATGCTGACCCATTTTACTGTTATTCGTAAGCTTGATGGGAATATATTTCCACTGGGATTCAGTAAGGAGGCTACGGACAGAAACATAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGTTAAATCGTTTGATGTTAGAATTACACAAGTTGGATAGTGATGTTCTTGTTGGACATAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGAAGTCTTCTGCATTCTATCCGATTAGCATTTTACACTTTGAAGGACCTGCAGCACCTAAAACACCCAATAAAAAACTTGTGCAGGCTTGCAAAGTACCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTGATAGAAGAAGCAAAGTTTTTGGTTCTGGAGCTGATCCTGGTATCATGTCTTGCATTGCTGGTCGGCTTCTTTGTGATACATATTTGTGTTCTCGTGACCTATTAAAGGAGGTTAGTTATGCTTTAACTCACCTCGCAAAAACACAGCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGACGTTCCAAAAATGTTCCAAACAACAAAATCCCTAATGGAGCTTATTCAATATGGTGAAACGGATGCCTGGTTGTCTATGGAACTCATGTTTCATCTGAGTGTTCTCCCGCTCACACGTCAGCTGACTAATATAAGTGGTAATTTGTGGGGAAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTGGAATATTTATTATTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGTTTACAAATCATGCAAAAGAAACAAAATTGACCAAACGCAGAGTACATGGTGTTGATGATAGCAACTTTGATGAAGCAGAAATTGATGATGCAAACTACAATAATGATGCTTCTGAACGTGATTATAAGAAAAACAAAAAGGCTTCTTCCTATGCTGGGGGTCTGGTTTTAGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGATTTCAATAGTCTTTATCCTTCTATCATTCAGGAATACAATATCTGCTTCACAACTGTTGAAAGATCTTCCGGCGGATCTTTTCCTCGTCTACCATCTAGTAAAATAACTGGAGTCTTGCCAGAGTTGCTGAAAAATCTGGTGGAAAGGAGGAGAAAGGTAAAGTCATGGATGAAGACTGCATCTGGTCTTAAAGTTCAGCAGCTGGACATTCAGCAGCAAGCACTGAAGCTTACTGCAAACAGCATGTATGGATGCCTGGGATTTTCCAATTCAAGATTTTATGCGAAACCACTAGCCGAGCTCATAACCCAACAAGGAAGGGAGATATTGCAGAGTACTGTTGATCTTGTTCAAAATAACTTGAATTTAGAGGTTATTTCTACTGCACTGCATTTTGAAGTGATCTATGGTGATACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCGAAAGCAAAGGCAATGGCTGGGAAAGTTATTCAAGAGGTCAATAAGAAATATAGATGCTTGGAAATTGATCTTGATGGTTTATATAAGAGGATGCTACTTCTCAAGAAAAAGAAATATGCAGCTGTAAAGGTGCAGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTGGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCAGGAGGGTCATGTGAAGATGTTGTTGAATCAATTCACAGCTCTCTCATGAAGGTGCAAGAAGAAATGAGGAACGGAGAAGTACCATTGGAAAAATATGTCATCACAAAGACATTAACTAAACCTCCTGATGCATATCCTGATGCCAAAAACCAGCCCCATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGTTACTCCTCTGGTTGCTCTGTTGGTGATACGATCCCTTATATAATTTGCTATGAGCAGGGTGGTAGTTCAGGCAGTGCAACAGGCATTGCCCAGCGTGCTAGACATCCTGATGAACTAAAACGAGAACAAGGGACATGGCTAATTGACATTGATTACTATTTGTCACAACAGATTCATCCTGTGGTATCACGTCTTTGTGCATCAATTCAAGGCACAAGCCCAGAAAGACTGGCTGATTGTTTAGGGCTTGATGCCTCAAAGTTTCAACTTAAATCAAGTGAAGCTTCAAGTGGTGATCCTATGAGCTCACTCTTGTTTGCTGCTGATGATGAGGAGAGGTATAGGGGATGTGAGCCGTTGGTCTTGTCATGCCCCAGCTGCTCAGGAACCTTTGACTGCCCACCTGTGTTTAAATCTATTTGTTCATTGGGAAGTGAAAAGCCAACCAGCTTAGGCACCGAGGAATCTGACTACAATTTCTGGAGTAAGCTGCACTGTCCTAAATGCCCGGAAAATGGTGTTGGAAGAATATCTCCTGCAATGATAGCTAATCAGGTCAAAAGGCAAGTAGAGAAGTTTGTTTTCATGTATTATAGAGGTTTACTAATGTGTGATGATGAAACGTGTAAACATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGATAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAACGGTCGTCTCTATAGAAAGTACACTGAAGCAGACTTGTACAAGCAGCTCTCATATTTTTGCCACGTGTTTGATACTGTTTGTTGTATAGAAAAGATGGAGGCAAAATCTAGGATCCCGATAGAGAAAGAATTGATCAAAATTAGACCGATGGTTGATCTTGCAGCGTCAACCGTTCAGAAGATCAGGGACCGTTGTGCTTATGGGTGGGTGAATTTCCAGGACCTGGTCGTTACAATTTAA 4716 0.4347 MADDEGSASRKRRTRGPEATARSQALERLKARLGGGRRSDPDGPQIRLENPIYDTVPEDEYNALVAKRREQARSFIVDDDGLGYGDGGEEEDWSKAGFTLSSDESDGESTKPKRKKDPQPKRQSSSSSALSAAAAMMGAQRLSSMFTSAVFKKSRDDKACDSIVDDVIAEFAPDETDRLSRRRLQVDSSSGANDAQRIKPSVGDSIRGSSLSKAFANGDAEPVRVFQNNGCDLGLEQKCEAEVNENVSSENGQVPVEQSNDCPSNEDLVEEKVAKDVEIEVKQDAKKEVFTLNAKVTKEEEDPALCATAGWQAAKSGAGGGVEINAADSKDASHSQQHTEFNLETDGSLPFYILDAHEEFYGANMGTLYLFGKVKTGNLYQSCCVVVKNMERCVYAIPSRPLHYTDEMVNLEKDVQESRISPQDFRKKLHDMVSDIKNEIAKHLVDLSVSTFSMAPVKRKYAFERSEIPTGENYVVKINYPFKDPVLPVDLKGESFCALLGTRCSALELFLIKRKIKGPSWLQVSNFSTRSASQRVSWCKFEVTVDSPKDIRISSNSSKFTFEIPPVVVTAINLKTTINEKQNINEIVSASVVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKLDGNIFPLGFSKEATDRNIKAGSNVLCVESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQKSSAFYPISILHFEGPAAPKTPNKKLVQACKVPSSMWSKLGRLNRSTMPKLDRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYALTHLAKTQLNKFRKEVAPHDVPKMFQTTKSLMELIQYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFTNHAKETKLTKRRVHGVDDSNFDEAEIDDANYNNDASERDYKKNKKASSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSSGGSFPRLPSSKITGVLPELLKNLVERRRKVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITQQGREILQSTVDLVQNNLNLEVISTALHFEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKVQEEMRNGEVPLEKYVITKTLTKPPDAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSATGIAQRARHPDELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDASKFQLKSSEASSGDPMSSLLFAADDEERYRGCEPLVLSCPSCSGTFDCPPVFKSICSLGSEKPTSLGTEESDYNFWSKLHCPKCPENGVGRISPAMIANQVKRQVEKFVFMYYRGLLMCDDETCKHTTRSISLRLVGDSDRGTVCPNYPRCNGRLYRKYTEADLYKQLSYFCHVFDTVCCIEKMEAKSRIPIEKELIKIRPMVDLAASTVQKIRDRCAYGWVNFQDLVVTI 1571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00110 1571 Coils Coil 282 302 - -
Sebi131g00110 1571 Pfam DNA polymerase family B, exonuclease domain 381 695 IPR006133 -
Sebi131g00110 1571 ProSitePatterns DNA polymerase family B signature. 1091 1099 IPR017964 GO:0000166|GO:0003676
Sebi131g00110 1571 Gene3D - 1167 1352 IPR042087 -
Sebi131g00110 1571 SUPERFAMILY DNA/RNA polymerases 877 1338 IPR043502 -
Sebi131g00110 1571 MobiDBLite consensus disorder prediction 75 134 - -
Sebi131g00110 1571 SMART polmehr3 565 1103 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi131g00110 1571 MobiDBLite consensus disorder prediction 1 58 - -
Sebi131g00110 1571 Pfam DNA Polymerase alpha zinc finger 1363 1567 IPR015088 GO:0003887|GO:0006260
Sebi131g00110 1571 Gene3D - 716 905 IPR036397 GO:0003676
Sebi131g00110 1571 Gene3D - 565 703 IPR036397 GO:0003676
Sebi131g00110 1571 MobiDBLite consensus disorder prediction 1 18 - -
Sebi131g00110 1571 MobiDBLite consensus disorder prediction 106 121 - -
Sebi131g00110 1571 NCBIfam DNA polymerase (pol2) 719 1321 - -
Sebi131g00110 1571 MobiDBLite consensus disorder prediction 182 208 - -
Sebi131g00110 1571 Gene3D - 391 517 - -
Sebi131g00110 1571 PRINTS DNA-directed DNA-polymerase family B signature 1089 1097 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi131g00110 1571 PRINTS DNA-directed DNA-polymerase family B signature 1027 1039 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi131g00110 1571 PRINTS DNA-directed DNA-polymerase family B signature 951 964 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi131g00110 1571 CDD DNA_polB_alpha_exo 565 844 - -
Sebi131g00110 1571 Gene3D Palm domain of DNA polymerase 933 1147 IPR023211 -
Sebi131g00110 1571 Pfam DNA polymerase family B 852 1323 IPR006134 GO:0000166|GO:0003677
Sebi131g00110 1571 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Sebi131g00110 1571 CDD POLBc_alpha 927 1339 IPR045846 GO:0003887|GO:1902975
Sebi131g00110 1571 FunFam DNA polymerase 992 1041 - -
Sebi131g00110 1571 Gene3D DNA Polymerase alpha, zinc finger 1362 1557 IPR038256 -
Sebi131g00110 1571 Coils Coil 1117 1137 - -
Sebi131g00110 1571 Gene3D Helix hairpin bin 992 1043 - -
Sebi131g00110 1571 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 18 1570 - -
Sebi131g00110 1571 FunFam DNA polymerase 1167 1353 - -
Sebi131g00110 1571 SUPERFAMILY Ribonuclease H-like 346 881 IPR012337 -
Sebi131g00110 1571 FunFam DNA polymerase 1362 1557 - -
Sebi131g00110 1571 FunFam DNA polymerase 391 517 - -
Sebi131g00110 1571 Gene3D - 351 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00110 Sebi-Chr131 1353521 1367842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00110 1 1569 Core DNA Replication Machinery Family AT5G67100 59.624 0.0 1855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00110 K02320 - gmx:100798779 2345.08