Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00107 ATGGAGTGGGTCCGTGGACAGTCTCTTGGCAGTGGAAGCTTCGCCACTGTCAATTTAGTTATACCCACTAACGGTTCTACTTCTACACCTCCCACAGCCGTCAAGTCCTCCAACGTTCACACCTCGTATTTGCTCAAGAACGAGGAACATGTCCTCAATCGCATAGGATGTTGCCCGCAAATCATCAAGTGTTTTGGCCACGACCAAACCTTAGAAAACGGTGAAGAGTGCTACAATCTATTTCTTGAATACGCTTCTGGTGGCACTCTTGCTGATCAGCTCAAGAACCACGGTTGCCGGTTCCCGGAATCCCTCGTTCGCCGATACACGAGGTCCATCGTCGAAGGTCTCAAGCACATTCATGCCAATGGTTTTGTCCACTGCGACGTGAAGCTCCAAAACATCCTCGTTTTCGAGAATGGCGACGTTAAGATTGCGGACTTTGGGCTTGCGAAGGAAACAGGGGAGAAACAGAGTCAAGGGTTGGAGTTCAGGGGAACTCCCATATTTATGTCGCCGGAATCAGTGAACGATAATGAGTACGAGTCACCGGCGGATATATGGGCTCTGGGCTGCGCCGTCGTGGAGATGGTGACCGGAAAACCTGCCTGGAACGTCCGCAGCGGGTCAAATATATGGTCGTTGTTTATGCGAATTTGGTTGGGAGATGAATTGCCGTTGATTCCTGATGAATTGTCAAAGGAGGGGAAGGATTTTCTGGAAAAGTGTTTTGTGAAGGATTCAAAGAAGAGATGGAGTGCAGAGATGCTTTTGAAACACCCTTTTGTCGCTGACGACACTGTTTCATTCATTGATTCATTGCCATTGCCATCCCCATCACCGACAACCCACTTCGATTTCCCGCATTGGTCTTCCACTGCAACCGCTTCGCTTCCCTCTTCTCTGGGTTCCGACGAATGGCGTGATCGGGACATTGGGCCTTCACCGACGGACCGTGTCCGTCGCCTGGTCACGGATGACGGACCAACGGATTGGTCAGAATCGGATAGCTGGATTATTGTTAGGTCATAG 1032 0.5029 MEWVRGQSLGSGSFATVNLVIPTNGSTSTPPTAVKSSNVHTSYLLKNEEHVLNRIGCCPQIIKCFGHDQTLENGEECYNLFLEYASGGTLADQLKNHGCRFPESLVRRYTRSIVEGLKHIHANGFVHCDVKLQNILVFENGDVKIADFGLAKETGEKQSQGLEFRGTPIFMSPESVNDNEYESPADIWALGCAVVEMVTGKPAWNVRSGSNIWSLFMRIWLGDELPLIPDELSKEGKDFLEKCFVKDSKKRWSAEMLLKHPFVADDTVSFIDSLPLPSPSPTTHFDFPHWSSTATASLPSSLGSDEWRDRDIGPSPTDRVRRLVTDDGPTDWSESDSWIIVRS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00107 343 Pfam Protein kinase domain 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00107 343 MobiDBLite consensus disorder prediction 298 333 - -
Sebi131g00107 343 Gene3D Transferase(Phosphotransferase) domain 1 2 288 - -
Sebi131g00107 343 MobiDBLite consensus disorder prediction 304 329 - -
Sebi131g00107 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 292 - -
Sebi131g00107 343 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Sebi131g00107 343 SMART serkin_6 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00107 343 CDD STKc_MAPKKK 2 263 - -
Sebi131g00107 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 35 IPR017441 GO:0005524
Sebi131g00107 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Sebi131g00107 343 FunFam Mitogen-activated protein kinase kinase kinase 17 2 294 - -
Sebi131g00107 343 ProSiteProfiles Protein kinase domain profile. 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00107 Sebi-Chr131 1330899 1331930 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00107 1 342 MAP Kinase Kinase Kinase AT5G67080 50.838 3.26e-119 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Sebi131g00107 Pkinase 2.3e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00107 - - gmx:100797177 493.426