Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00106 ATGGAGTGGGTTCGTGGACAATCCCTTGGTAGTGGAAGCTTCGCCACTGTCAATTTAGTTATACCCACTAACGGTTCTACTTCTACACCTCCCACAGCCGTCAAGTCCTCCAACGTTCACACCTCGTATTTGCTCAAGAATGAGGAACATGTCCTCAATCGCATAGGATGTTGCCCGCAAATTATTAACTGTTTTGGCCACGATCAAACCTTAGAAAACGGTGAAGAGTACTACAATCTGTTTCTCGAATACGCTTCTGGTGGCACTCTCGCTGATCAGCTCAAGAACCACGGTGGCCGGTTCCCGGAATCTCTCGCTCGCCGATACACGAGGTCCATCGTTGAAGGTCTCAAGCACATTCATGCCAATGGTTTCGTCCACTGCGACGTGAAGCCCCAAAACATCCTCGTTTTCGACAATGGCGATGTCAAGATTGCGGACTTTGGGCTTGCGAAGGAAACAGGGGAGAAAGAGAAACAGAGTCAGAGGTGGGAGTTCAGGGGAACTCCTATGTTTATGTCGCCGGAATCGGTGAACGACAACGAATATGAATCACCGGCGGATATATGGGCTCTGGGCTGCGCCGTCGTGGAGATGGTGACCGGAAAACCCGCCTGGAACGTCCGCATCGGGTCGAATATATGGTCGTTGTTGATTCGAATTGGGGTGGGAGAAGAATTGCCGTTGATTCCAGATGAAATGTCAAACCAGGGGAAGAATTTTCTAGAGAAGTGTTTCGTGAAGGATCCAAAGAAGAGATGGAGCGCAGAGATGCTTTTGAAGCATCCCTTTCTCGCCGATGACACTGTTTCATTTAATGATTCATTGCCATCATCATCTCCAAGAACACACTTCGATTTCCCTCATTGGGCTTCCACTCTAACGGCTTCACCGGATTCTGACGAATGGCGTGAATTTGTGCCTTTGCCGGGAAACCGAATCCGGCGGCTGGTCACGGATCAGGGACCAATGGATTGGTCAGAATCGGATAGCTGGACTAATGGTGTGGATATAGCTGAGTATACTATATGGGCTCTGGCCCGTAAAACTCACATCATATGCAGGCTTGGAGGGTTTTTTAAGCTCCAAAAACCCATTATGCTAAATCTGAATTCCAGACTAGCTAGAGTAGGAGCTTCGATCGTCAAACAACTCTGCACAGGGAATTATATATCCATGTGCAGAGCAGGATATGTTCGAAGCGCCAGAAATCATTACCTGCAACCTTCGTTTCAAGAGCATTCATTTACTAAGTTATACAAGGGAGCCATAATTGAGAAGCATAATTTCCTTTCAACAACGGCTACTAACAACACTACTGAGGATGGGAGTGAAGAAAAAGAAATGATATCTGTAACTTTTATTGATAAGGATGGCGAGGAAAAGCTTATCAAAGTCCCTGTTGGAATGTCCATGTTAGAAGCTGCTCATGAAAATGACATTGAACTTGAAGGAGCATGTGAGGGCTCACTTGCGTGTTCAACTTGCCATGTTATAGTCATGGACGTAGAATATTACAATAAATTGGAAGATCCAACTGACGAGGAAAATGACATGTTGGATCTAGCTTTTGGGCTTACTGAAACATCACGACTAGGTTGCCAAGTGATCGCTAAACCTGAACTTGATGGAATTCGTTTAGCCATTCCTGCTGCCACTCGAAACTTTGCTGTTGATGGTTATGTGCCTAAGCCACACTAA 1701 0.4615 MEWVRGQSLGSGSFATVNLVIPTNGSTSTPPTAVKSSNVHTSYLLKNEEHVLNRIGCCPQIINCFGHDQTLENGEEYYNLFLEYASGGTLADQLKNHGGRFPESLARRYTRSIVEGLKHIHANGFVHCDVKPQNILVFDNGDVKIADFGLAKETGEKEKQSQRWEFRGTPMFMSPESVNDNEYESPADIWALGCAVVEMVTGKPAWNVRIGSNIWSLLIRIGVGEELPLIPDEMSNQGKNFLEKCFVKDPKKRWSAEMLLKHPFLADDTVSFNDSLPSSSPRTHFDFPHWASTLTASPDSDEWREFVPLPGNRIRRLVTDQGPMDWSESDSWTNGVDIAEYTIWALARKTHIICRLGGFFKLQKPIMLNLNSRLARVGASIVKQLCTGNYISMCRAGYVRSARNHYLQPSFQEHSFTKLYKGAIIEKHNFLSTTATNNTTEDGSEEKEMISVTFIDKDGEEKLIKVPVGMSMLEAAHENDIELEGACEGSLACSTCHVIVMDVEYYNKLEDPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGIRLAIPAATRNFAVDGYVPKPH 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00106 566 ProSitePatterns Adrenodoxin family, iron-sulfur binding region signature. 487 497 IPR018298 GO:0051537|GO:0140647
Sebi131g00106 566 Gene3D - 432 553 IPR012675 -
Sebi131g00106 566 FunFam Mitogen-activated protein kinase kinase kinase 17 2 294 - -
Sebi131g00106 566 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00106 566 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Sebi131g00106 566 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 450 553 IPR001041 GO:0051536
Sebi131g00106 566 Pfam Protein kinase domain 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00106 566 Gene3D Transferase(Phosphotransferase) domain 1 2 297 - -
Sebi131g00106 566 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00106 566 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 295 - -
Sebi131g00106 566 ProSitePatterns Protein kinases ATP-binding region signature. 9 35 IPR017441 GO:0005524
Sebi131g00106 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Sebi131g00106 566 Pfam 2Fe-2S iron-sulfur cluster binding domain 456 538 IPR001041 GO:0051536
Sebi131g00106 566 CDD STKc_MAPKKK 2 265 - -
Sebi131g00106 566 CDD fer2 452 542 IPR001041 GO:0051536
Sebi131g00106 566 SUPERFAMILY 2Fe-2S ferredoxin-like 449 550 IPR036010 GO:0051536
Sebi131g00106 566 PRINTS Adrenodoxin signature 487 497 IPR001055 GO:0051537|GO:0140647
Sebi131g00106 566 PRINTS Adrenodoxin signature 530 538 IPR001055 GO:0051537|GO:0140647
Sebi131g00106 566 PRINTS Adrenodoxin signature 507 521 IPR001055 GO:0051537|GO:0140647
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00106 Sebi-Chr131 1319071 1324191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00106 1 334 MAP Kinase Kinase Kinase AT4G36950 53.982 6.28e-120 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Sebi131g00106 Pkinase 4.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00106 - - aprc:113869133 517.309