Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00060 ATGTTTCTCCATCAGCAGACAAATTTCGCAACTGTGATCACAATCTTAATCTTCTTAGTGAGCACAACAAGAACACAAAACCTCCCAAACTGCGAGAACCGTTGCGGAGAGGAGTCCGTGCAGTACCCTTTTAGCTTCTCTGAAGGTTGTGGAATCAAACTAAACTGTAACAACAGCAAAGTCCAAGTGGGTGATTTTCTGGTTCAGAACATAACCAGCAGCAGCATATTCATCGATCTCCCTGCAAAATGCAACCGTACCATGGAATCCATTCATCCACTTTTCAGTGACAACTTCGCTCCCACACGGAACAATAGTTTTCTGGTGCAAGATTGCAAAGCTTCTCTGGGTGGCTGCGTTATTCCCGCTTCAAGTTTTGTGGGCAATTGCGATAACAGAAGTGGTAATATCAGTTGTTTTACACAGCAGCAGCAACAGGAGCAAGAAGTGGATGTTGTGTCATATGAGGAATTGAACCAAACTGGGTGCAATTACTTGTTCTCAGCAGTTGCTGCTATTGAGAATTCGCTGCAGTTTCAGGTGGTTGAATTGGGGTGGTGGCTTCAAGGGTCGTGTCAATGCTCTCCCAACGCTACCTGCACAATGGTTCATCTCAAAGAAGGGAGCTTTGGGTACCGGTGTCAATGTCCAAATGGTTTCCAAGGAGACGGCTTCGCCAACGGCACCGGTTGCCGGAGAGGTCCAAGCTGCAGTGCTTCAACACTGACGTCTGGGGGGTGTGGAAATGGAGCCAAAATCGGTGTTATCGTCGGAGTGATAGTAACTGGAGCTGTGGTCGTGGTTGCTCTCTTTGTTCTATGCTACTGTGCCAGGCGCCGTTCTACTTGGTTGAGAAAACATACCAGAGTAAAGCTCCTTTTACGTGAAGCTGCAGGCAACTCTAGTGTACCTTTATACCCTTATAAAGAAATTGAGAAGGCCACAAATTCTTTCTCTGAGAAACAGAGGCTGGGAAATGGGGCATTTGGTACCGTTTATGCTGGAAAACTTCATAATGATGAGTGGGTTGCTATAAAGAAGATAAGGTATAGAGATACTAACAGTGTTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAATTTAGTTCGCCTCCTAGGTTGCTGCATAGAGGAAGGAGAGCAGATACTTGTTTACGAATATATGCCCAATGGAACACTATCTGAGCATTTGCAAAGAGAAAGGGAGATAATAACTGCCATGAAAGTGGTTGATTTTGGTCGACCTCAGAGTGAGGTTAATTTAGCTGCACTTGCTGTTGATAGAATCAGAAGGGGTTCTGTAGATGAGATCATAGATCCCTTCCTTGAACCACATAGAGATGCTTGGACACTGTATTCCATTCATAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACTATGACAGAAGTAGCTGAGGAGCTAGAACATATCAGACGCAGTGGATGGGCAACTATGGAGGAAACTATATGCTTGGCTTCATCAATTGGGTCCACAAGTTCATCACCTCGCAATGGAAGTGAGAAGTCACTGGGTGGTGGTATTAAGTTCAAGAAACCAGGGCAAGGGAGTGAGGGATTGATTGTTCCACAGAAGACCGAGAGTTTCTTGCATCCTATGGAGATGGAGGTGAAGGACAGCTCCCCTGTATCGGTGCATGATCCTTGGTCAAGTGGACACAGCTCACCTTCAACAAACAGCTTGTTGGGGAATGTCGTTCGGTGA 1764 0.4569 MFLHQQTNFATVITILIFLVSTTRTQNLPNCENRCGEESVQYPFSFSEGCGIKLNCNNSKVQVGDFLVQNITSSSIFIDLPAKCNRTMESIHPLFSDNFAPTRNNSFLVQDCKASLGGCVIPASSFVGNCDNRSGNISCFTQQQQQEQEVDVVSYEELNQTGCNYLFSAVAAIENSLQFQVVELGWWLQGSCQCSPNATCTMVHLKEGSFGYRCQCPNGFQGDGFANGTGCRRGPSCSASTLTSGGCGNGAKIGVIVGVIVTGAVVVVALFVLCYCARRRSTWLRKHTRVKLLLREAAGNSSVPLYPYKEIEKATNSFSEKQRLGNGAFGTVYAGKLHNDEWVAIKKIRYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSEHLQREREIITAMKVVDFGRPQSEVNLAALAVDRIRRGSVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMTEVAEELEHIRRSGWATMEETICLASSIGSTSSSPRNGSEKSLGGGIKFKKPGQGSEGLIVPQKTESFLHPMEMEVKDSSPVSVHDPWSSGHSSPSTNSLLGNVVR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00060 587 ProSitePatterns Protein kinases ATP-binding region signature. 324 347 IPR017441 GO:0005524
Sebi131g00060 587 Gene3D Phosphorylase Kinase; domain 1 279 393 - -
Sebi131g00060 587 MobiDBLite consensus disorder prediction 556 587 - -
Sebi131g00060 587 MobiDBLite consensus disorder prediction 507 521 - -
Sebi131g00060 587 CDD EGF 191 224 - -
Sebi131g00060 587 ProSiteProfiles Protein kinase domain profile. 318 587 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00060 587 SUPERFAMILY Protein kinase-like (PK-like) 308 494 IPR011009 -
Sebi131g00060 587 MobiDBLite consensus disorder prediction 507 537 - -
Sebi131g00060 587 Pfam Protein tyrosine and serine/threonine kinase 321 418 IPR001245 GO:0004672|GO:0006468
Sebi131g00060 587 MobiDBLite consensus disorder prediction 564 587 - -
Sebi131g00060 587 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 408 574 IPR044652 GO:0004672
Sebi131g00060 587 FunFam Wall-associated receptor kinase-like 14 285 393 - -
Sebi131g00060 587 Gene3D Laminin 192 227 - -
Sebi131g00060 587 Gene3D Transferase(Phosphotransferase) domain 1 408 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00060 Sebi-Chr131 723852 727792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00060 408 587 Receptor kinase-like Gene Family AT2G23450 60.556 5.53e-57 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi131g00060 PK_Tyr_Ser-Thr 1.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00060 - - gmx:100779130 538.495