Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00050 ATGGCATTAAGTGTAAGATATGCTCAGCAGAATTTCCTGATGACCAAGCACTTGGGAACCATTGGATGGACAGTCATAAAAAGGAAGCACAGTGGCTATTTAGAGGCAACAAACTCACTTGGAGGGGAAGGAAAAACTGTACAGCCTCAACTAACGGAAACAACAAATATCAGTGGATTGACAGAACATCAATGTTCAGCTGTTGCAAAAATTTTGTTTTCAGAGATTCAGAAAACTAAACCTCGACCTAACAATCTTGATGTTTTATCAATTGCTCGCTCTGCTTGCTGCAGAATTAGTCTTGCAGCCTCACTGGAGGAGAAATATGGAATTTTGCCTAAAAAGCTGTATTTGAAGGCAGCAAAACTGTGCAGCGAGCATAACATTGTTGTGAATTGGCACCAGGAGGGGTTTGTTTGTCCAAGAGGTTGTAATATGTTAAAGGATCAAGCATTGCTCTCTCCTTTAGCATCTCTTCCTAATGGTTCTGTAATGCCAAAATCTGTTAATATATCTGATCCTGCAAGTGATGAGTGGGAGGTGGATGAGTTTCACTGCATCATCAGTTCACCTAGTTTAAAATTTGGTTCACTGCAAAAAGCTATAGTCTTGTGTGATGACATTAGCTTTGGGAAGGAGTCAGTTCCAGTGATATGTGTGGTAGATCAAGAACTTTTGCATTCTCTACATACGCAGAGGTCTGATGAACAAGATATGAACTCTTCTAAACCTTGGGAGAGCTTTACCTATATTACAAAGCCAATGCTTGATCAATCCCTTAGTCTTGATTCAGAGAGTCTGCAAATGGGATGTGCTTGCTCATATTCTACCTGCTGTCCTGAAACATGTGATCATGTATACCTTTTTGGTAATGACTATGTTGATCCAAAAGACATATTTGGGAAACCAATGCGTGGCAGGTTCCCATATGATGAGAATGGTCGAATAATATTGGAGGAAGGTTACCTTGTCTATGAGTGTAACCATATGTGCAGGTGCAATAAATCCTGTCCAAACAGAGTATTGCAGAATGGAGTACGAGTCAAACTGGAAGTCTTCAAAACAGAGAAAAAGGGATGGGCGTTAAGGGCTGGTGAAGCTATTCTACGTGGCACATTTGTGTGCGAGTACATTGGAGAGGTTTTAGATGTGCAGGAAGCACACAACAGGCACAAGAGATATGGCACAGGGAATTGCAGTTATTTCTATGACATCAATGCTCATGTTAATGATATGAGCAGATTGATTGAAGGGCAGGCCCAATATGTAATTGATGCTACTAAATATGGAAATGTGTCAAGGTTCATCAATCATAGCTGCTCGTCCAATCTTGTCAGTCACCAAGTTCTCATAGAGAGCATGGATTGTGAGCGTACACATATTGGTCTTTATGCAAGTCGAGATATTGCTTTGGGTGAAGAGCTGACATATGACTATCAGTATGAGCCTGTGCCTGGAGAAGGATATCCTTGTCTTTGTGAATCATCCAAGTGTAGGGGACGCCTTTACTAG 1512 0.4107 MALSVRYAQQNFLMTKHLGTIGWTVIKRKHSGYLEATNSLGGEGKTVQPQLTETTNISGLTEHQCSAVAKILFSEIQKTKPRPNNLDVLSIARSACCRISLAASLEEKYGILPKKLYLKAAKLCSEHNIVVNWHQEGFVCPRGCNMLKDQALLSPLASLPNGSVMPKSVNISDPASDEWEVDEFHCIISSPSLKFGSLQKAIVLCDDISFGKESVPVICVVDQELLHSLHTQRSDEQDMNSSKPWESFTYITKPMLDQSLSLDSESLQMGCACSYSTCCPETCDHVYLFGNDYVDPKDIFGKPMRGRFPYDENGRIILEEGYLVYECNHMCRCNKSCPNRVLQNGVRVKLEVFKTEKKGWALRAGEAILRGTFVCEYIGEVLDVQEAHNRHKRYGTGNCSYFYDINAHVNDMSRLIEGQAQYVIDATKYGNVSRFINHSCSSNLVSHQVLIESMDCERTHIGLYASRDIALGEELTYDYQYEPVPGEGYPCLCESSKCRGRLY 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00050 503 SMART set_7 348 486 IPR001214 GO:0005515
Sebi131g00050 503 SMART preset_2 205 332 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi131g00050 503 ProSiteProfiles Post-SET domain profile. 487 503 IPR003616 -
Sebi131g00050 503 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 39 503 - -
Sebi131g00050 503 Gene3D SET domain 191 484 IPR046341 -
Sebi131g00050 503 Pfam Pre-SET motif 208 340 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi131g00050 503 ProSiteProfiles SET domain profile. 348 480 IPR001214 GO:0005515
Sebi131g00050 503 SUPERFAMILY SET domain 197 493 IPR046341 -
Sebi131g00050 503 Pfam SET domain 359 479 IPR001214 GO:0005515
Sebi131g00050 503 ProSiteProfiles Pre-SET domain profile. 269 345 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00050 Sebi-Chr131 618019 622886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00050 16 502 C2H2 Transcription Factor Family AT2G23740 53.629 7.44e-177 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi131g00050 Pre-SET 2.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00050 - - gmx:100776704 816.994