Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00047 ATGGCCCTGGCCGAATTATCCACAGAACAGGTTCTGAGGAGGGACATCCCATGGGAGACCTACATGTCCACTAAGCTTATCTCAGGCACAAGCCTTCAGCTCTTAAGGCGTTATGATCATCGATCAGAAAGTCACAGAGCACAGTTGCTGGATGATTGCCAGGCCAAAAGATCAAAAGGGCAGTGTTGCAAATGGAGAAACATCAAACTCAAAAAACCATTTACCGCCATTGATGACGCTTTGATAGGATTGGTAAAATGGCTTTGTGAACAGCTGAAGAAACCCTCTCATCCTACTCGGGGTGTCCCAACCGCTATCAATTGCCTAGCAACTCTACTTAAGGAACCTGTGGTTAGGTCTACCTTTGTTCAAATGGATGGGATCAAGTTGCTCATACCTTTGATTTCTCCAGCATCCACCCAACAGTCTATTCAACTTCTTTATGAAACTTGTCTCTGCATATGGCTCCTATCCTATTATGAGCCGGCCATTGAATACCTGGCTACTTCAAGAACCCTTCCACGACTTATTGACGTTGTCAAGAGTTCTACAAAAGAGAAGGTTGTTAGAGTGATTGTCTCAACCCTTAAGAACTTATTGTCAAAAGGGACATTGGGTGCTCAAATGGTTGACCTTCAGCTACCACAAGTTGTTCAGAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCATTGAATTGCCTGGAAGAAGGGCTAAAGGATAACATTAAGAAACTAAGTTCTTATGATAAGTATAAGCAAGAAGTTCTCCTTGGCCATCTGGATTGGACTCCTGTGCACAAAGATCCCATATTTTGGCGAGAAAATATTACCAACTTCGAAGAGAATGATTTCCAGATTTTGAGGGTCCTAATAACAATTTTAGACACGTCAAATGATCCAAGGACTCTGGCCGTTGCTTGCTTTGATCTTTCACAGTTCATCCAACACCATCCTGCTGGGCGTATCATTGTGACTGACCTTAAAGCCAAGGAACGAGCAATGAAATTAATGAATCACGAGAATGCTGAAGTTACTAAAAATGCGCTCCTCTGCATCCAACGGCTTCTCTTAGGTGCGAAATATGCCAGCTTCCTGCAGGCATAG 1116 0.4355 MALAELSTEQVLRRDIPWETYMSTKLISGTSLQLLRRYDHRSESHRAQLLDDCQAKRSKGQCCKWRNIKLKKPFTAIDDALIGLVKWLCEQLKKPSHPTRGVPTAINCLATLLKEPVVRSTFVQMDGIKLLIPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVIVSTLKNLLSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNCLEEGLKDNIKKLSSYDKYKQEVLLGHLDWTPVHKDPIFWRENITNFEENDFQILRVLITILDTSNDPRTLAVACFDLSQFIQHHPAGRIIVTDLKAKERAMKLMNHENAEVTKNALLCIQRLLLGAKYASFLQA 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00047 371 FunFam V-type proton ATPase subunit H 262 363 - -
Sebi131g00047 371 Gene3D - 262 363 IPR038497 -
Sebi131g00047 371 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 4 54 IPR004908 GO:0000221|GO:0046961|GO:1902600
Sebi131g00047 371 SUPERFAMILY ARM repeat 8 361 IPR016024 -
Sebi131g00047 371 Pfam V-ATPase subunit H 248 361 IPR011987 GO:0000221|GO:1902600
Sebi131g00047 371 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 317 324 IPR018506 GO:0020037
Sebi131g00047 371 Coils Coil 331 351 - -
Sebi131g00047 371 SMART arm_5 160 201 IPR000225 GO:0005515
Sebi131g00047 371 SMART arm_5 114 159 IPR000225 GO:0005515
Sebi131g00047 371 SMART arm_5 321 361 IPR000225 GO:0005515
Sebi131g00047 371 Gene3D - 2 69 IPR011989 -
Sebi131g00047 371 Gene3D - 70 250 IPR011989 -
Sebi131g00047 371 Pfam V-ATPase subunit H 6 52 IPR004908 GO:0000221|GO:0046961|GO:1902600
Sebi131g00047 371 Pfam V-ATPase subunit H 69 242 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00047 Sebi-Chr131 533870 540385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00047 1 52 Primary Pumps ATPases(2) AT3G42050 73.077 5.52e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00047 K02144 - gmx:100788723 550.436