Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00043 ATGCCCTGCGTTCTGCCCCTTCAGCAGATTCCGCTCTCTCCCCTCATACATGCCCTCGAGAAAAGTCCCCATTTTTCACATACCCAAAATACCCTCCATGCCCTCGCCACTGTGCTCGCCAGGTCTGGTCGATGCACATTGCTCAAATCACTCATTGATTCTATCCGAGCTAAACAATTCGGCAATGTTAAGATTAGCTTTATGAATCTCATGCAGTGGCATGCTGCTGCTAGGGACCTTGACTCTGTTCTTGTGGGTCCTGGGATCAGTATAGGCTTGCCAATGATAACCATGTTTGCACTGAATCTTTTAACATTGTTATGGCTCTTTATGCTCAAATGGGACAAGACTCTGATGTTGTGCGAGTTTTTTCACAGGATGATTGATGAAGGGTCACTTCCCAATTGCAGAAGCTACACTATAATAATTGAGCACCTTGTGAAATCCCGAAAATTATCAGAAGCCATGGAGGTCTTTAACTTGTTGCCTTCCATGAGGATCAAACGCACCTTGAAACTGTACTCTATTCTGATTGAAGGTGATCAAATTGATGAGATTCATTTAAAACCGTGGCTGGACCCAATGGCTTGGCTAATGCCCTACAGAATTGGAATCCTGATGAGGCAGAGCGGTTTAGAGCCAGATGCTTATCTGTACAAGGTTTGGTGCCTGACTCTGCTATCAAGAGTTGCTAGTGAAGAGCCTTTGGAAAGAGGGAGACGGAGAGAGGCTGCAGCAGTGGAAGAGAGCTGTGAGGAAATAGCTCAATCACAACAGAACAGTGGAACAAACTTTTCATGCCCTGTGGATTCACCTCCTTCTTGTGAAACATATGTGGCATACATTGCTCATAACATAGAGGCTGAGAATGATAAGCTGATTCCAGGCCAACTCTTACTAGTACCTGTGACTTGTGGTTGCACTGGAAAACGTTCTTTTGCTAACATCTCCTATGAAATGAAGCTAGTGGAAGATTTAAACCCCGGTATAAATCCAAGAACGTTGCCACCAGGCATGAAAGTAGTATTCCCATTGTTCTGCAGATGCCCTTCAAAGAATCAGTTGAACAAAGGGATTAAGTATCTGATTACTTATGTGTGGCAGGCCAATGACAATGTTCCCCTTGTAAGTTCCAAGTTTGGTGCATCATCAGTGGACATATTGGCTGAAAACAACTATGGTCAAAACTTCACCACTGCAACCAACCTTCCAGTTTTGATCCCAGTGACAAGGTTGCCAGATCTTACTCAACCTACTTCAAATGGAGGAAAAAGCAGGACTCATCTTCCGGTTATAATTGGTATTAGCCTGGGATGCACACTTCTGATTGCAGTTTTAACTTTATCACTGGTATATGTATATTGTCTGAAAATGAAGGCTATGAATAGCAGTGTTTCCTCAGCTGAGAATGCAGATAAGCTACTTTCAGGAGTTTCAGGGTATGTGAGCAAGCCAACCGTGTATGAAATTGATGCAATCATGGAAGGTACCATGAACCTCAGTGACCAGTGCAAGATTGGGGAATCAATGTACAAGGCTAATATAGATGGTCGGATTTTAGCAGTGAAAAAAGTCAAGGAAGCATCTGAGGAGCTGAAAATTCTGCAGAAGGTAAATCATGGAAATCTGGTGAAATTAATGGGTGTGTCTTCAGATAATGATGGAAACTGTTTCTTGGTTTATGAATATGCTGAAAATGGGTCTCTAGATGAGTGGCTATTCTCCAAGTCTTCAGGAACCTCAAACTCCATGGTCTCTCTTACATGGTCTCAGAGGATAAGCATAGCAATGGATGTTGCTGTGGGTCTACAATACATGCATGAACATACTTATCCAAGAATAGTCCACAGGGACATCACATCAAGTAATATCCTTCTTGACTCAAACTTTAAGGCCAAGATAGCAAATTTCTGTATGGCCAGAACTTCAACCAACCCTATGATGCCAAAAATAGATGTCTTTGCTTTTGGGGTGGTTCTGATAGAGTTGCTTAGTGGAAGGAAAGCCATAACAACAAAAGAAAATGGTGAGGTGGTTATGCTGTGGAAAGATGTTTGGAAGATCTTTGATATAGAAGAGAATAGAGAGGAGAGTCTCCGAAAATGGATGGATCCTAAGTTAGAGAGCTTTTATCCAATAGATAATGCTCTCAGCTTGGCCTCTTTGGCAGTGAATTGCACTGCAGAGAAGTCTTTATCCAGACCAAGCATGGCAGAAATTGTTCTTAGCCTCTCTCTTCTCACTACTCAACCATCTTACCCAACATTAGAGAGATCCTTGACTTCTGGGTTAGATGTGGAAGATACTCAAATTGTCACTTCCATAGCTGCACGTTGA 2337 0.4258 MPCVLPLQQIPLSPLIHALEKSPHFSHTQNTLHALATVLARSGRCTLLKSLIDSIRAKQFGNVKISFMNLMQWHAAARDLDSVLVGPGISIGLPMITMFALNLLTLLWLFMLKWDKTLMLCEFFHRMIDEGSLPNCRSYTIIIEHLVKSRKLSEAMEVFNLLPSMRIKRTLKLYSILIEGDQIDEIHLKPWLDPMAWLMPYRIGILMRQSGLEPDAYLYKVWCLTLLSRVASEEPLERGRRREAAAVEESCEEIAQSQQNSGTNFSCPVDSPPSCETYVAYIAHNIEAENDKLIPGQLLLVPVTCGCTGKRSFANISYEMKLVEDLNPGINPRTLPPGMKVVFPLFCRCPSKNQLNKGIKYLITYVWQANDNVPLVSSKFGASSVDILAENNYGQNFTTATNLPVLIPVTRLPDLTQPTSNGGKSRTHLPVIIGISLGCTLLIAVLTLSLVYVYCLKMKAMNSSVSSAENADKLLSGVSGYVSKPTVYEIDAIMEGTMNLSDQCKIGESMYKANIDGRILAVKKVKEASEELKILQKVNHGNLVKLMGVSSDNDGNCFLVYEYAENGSLDEWLFSKSSGTSNSMVSLTWSQRISIAMDVAVGLQYMHEHTYPRIVHRDITSSNILLDSNFKAKIANFCMARTSTNPMMPKIDVFAFGVVLIELLSGRKAITTKENGEVVMLWKDVWKIFDIEENREESLRKWMDPKLESFYPIDNALSLASLAVNCTAEKSLSRPSMAEIVLSLSLLTTQPSYPTLERSLTSGLDVEDTQIVTSIAAR 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00043 778 ProSiteProfiles Protein kinase domain profile. 468 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00043 778 Gene3D Phosphorylase Kinase; domain 1 476 563 - -
Sebi131g00043 778 Gene3D Transferase(Phosphotransferase) domain 1 564 645 - -
Sebi131g00043 778 SUPERFAMILY Protein kinase-like (PK-like) 510 744 IPR011009 -
Sebi131g00043 778 Gene3D Tetratricopeptide repeat domain 13 187 IPR011990 GO:0005515
Sebi131g00043 778 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 135 169 IPR002885 -
Sebi131g00043 778 Pfam Protein tyrosine and serine/threonine kinase 525 643 IPR001245 GO:0004672|GO:0006468
Sebi131g00043 778 Gene3D Transferase(Phosphotransferase) domain 1 646 755 - -
Sebi131g00043 778 NCBIfam pentatricopeptide repeat 138 168 IPR002885 -
Sebi131g00043 778 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 285 749 - -
Sebi131g00043 778 ProSitePatterns Tyrosine protein kinases specific active-site signature. 614 626 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00043 Sebi-Chr131 505185 510405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00043 289 747 Receptor kinase-like Gene Family AT3G21630 30.654 2.76e-56 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Sebi131g00043 PK_Tyr_Ser-Thr 9.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00043 - - gmx:100301877 805.823