Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00042 ATGCCTCTCTTTCCTTTCATCACTGTCTTCATTTTCACCTTATTGATCTCCCACTTCTCTGTCATTCAGGGGCAGCAACCTTATATTGCTCGAGCCACAACAGCCTGTCCTCGAAGGGGTGATTCAAATTCTATGCGTGGTTACATTTGTAATGGCGCAAATCACACCTGCCAAGCTTACCTTACCTTCAGATCTCAACCTATTTACAGCTCAGTTCACACAATTTCTGCTCTCTTGGGTTCTGACCCATCTCAGCTTGCTGAAATAAATTCAGTTTCCCTGAATGACACCTTTGACACAAACAAGTTAGTGCTTGTTCCTGTCAACTGTTCTTGTGCAGGTCAATATTATCAGGCAAACACATCCTATGTGTTCCAGAACACAGACACCTACTTTTTGATTGCTAACAACACTTTTGAGGGCCTCTCATCTTGTCAAGCATTGATGCATGAAAACCACAATCCTGGTGATATATACCCTGGTAGAAAACTCATGGTTCCTCTTAGATGTGCTTGTCCTACAAAGAATCAAACTGAGAAAGGCATCAAGTACCTCTTAAGTTACTTGGTAGACTGGGGTGATTCTGTCTCATTCATTAGTAACAGATTTGGTGTCAACTTTAAGACAACTCTTGAAGCTAATACCCTTTCCTTGACATCCATTATCTATCCCTTTACCACACTTCTAGTTCCCCTTCATGATAAGCCATCAAGTTCTCAAATTGTTTCACCACCTCAACCCTCTCCCTCATCCCCCTCTTCCTCTTCCACAGATCAAAGCTCAAACAAAACATGGGTGTATGTAGTTGTTGGAGTACTTGGAGGAGTTCTTGCCTTAACAGTAGTTTTCTCTGCTGTCATGTTCTTCACACGCTATAACAAAAGTAAAAAGAAAGATGATTCAGTGATTGTGTCTAAGAGTTTTGAGGCAGTTGAGAAACCACCACCACAAGAGAAGGAAAATGAAAAATTGCAAGAGATCATATCAGGCATAGCTCAATCTTTCAAAGTGTATGGTTTTGAGGAACTAAAGCTTGCAACAGATAATTTTAGTCCAAGTTGTTGGATTAAAGGATCTGTTTTTCGTGGTGTGATTAATGGAGATTTGGCTGCAATTAAGAAAACAGAAGGAGATGTGTCCAAAGAGATACAAATACTCAACAAAGTGAACCATTCTAATGTTATACGCCTCTCTGGGGTTAGCTTCAACCAGGGCCAATGGTACCTTGTTTATGAGTATGCTGCTAATGGAGCATTGAGTGATTGGATCTATTTCAACAACGTGGATGGCAAGTTTCTGAGTTGGACTCAGAGGATTCAGATTGCATTTGATGTGGCCACAGGAGTTGACTATCTTCATAATTTCACTTCTCCTCCTCATATCCACAAGGATTTGAAAAATAGTAACATTCTTTTGGACAGTGATTTCAGGGCAAAGGTTGCAAATTTAAGCCTTGCGAGGTCTGTGGAAGGAGTGGATGATCAATTTCTTGCAACAAGGCATATTGTTGGGACAAGAGGTTACATGGCTCCTGAGTATTTGGAAAATGGTCTTGTTTCTACAAAGCTTGATGTCTATGCATTTGGGGTGATGATGCTTGAAATCCTCACTGGAAAAGAGGTTGCTGCTATTTTAACAGAAGATAATCCAAATTTGGAAGATGTTTTGAGTGCTATACTTGGTGAGAAAGGTGGCCAGGAGAGGTTGAAGGAGTTTATGGATCCCTCTCTTCAAGGAAATTATCCATTAGAACTTGCTATGTTTGTGGTTGAAATGATTGATAATTGCATCAAGAAAGATCCAACAAGTCGCCCTGCCATGCATGAGATTGTGCCATCTCTGTCAATAACACTGAACTCTTCATTGAGTTGGGAAAAGTCAGTGAAAATCTAA 1893 0.4046 MPLFPFITVFIFTLLISHFSVIQGQQPYIARATTACPRRGDSNSMRGYICNGANHTCQAYLTFRSQPIYSSVHTISALLGSDPSQLAEINSVSLNDTFDTNKLVLVPVNCSCAGQYYQANTSYVFQNTDTYFLIANNTFEGLSSCQALMHENHNPGDIYPGRKLMVPLRCACPTKNQTEKGIKYLLSYLVDWGDSVSFISNRFGVNFKTTLEANTLSLTSIIYPFTTLLVPLHDKPSSSQIVSPPQPSPSSPSSSSTDQSSNKTWVYVVVGVLGGVLALTVVFSAVMFFTRYNKSKKKDDSVIVSKSFEAVEKPPPQEKENEKLQEIISGIAQSFKVYGFEELKLATDNFSPSCWIKGSVFRGVINGDLAAIKKTEGDVSKEIQILNKVNHSNVIRLSGVSFNQGQWYLVYEYAANGALSDWIYFNNVDGKFLSWTQRIQIAFDVATGVDYLHNFTSPPHIHKDLKNSNILLDSDFRAKVANLSLARSVEGVDDQFLATRHIVGTRGYMAPEYLENGLVSTKLDVYAFGVMMLEILTGKEVAAILTEDNPNLEDVLSAILGEKGGQERLKEFMDPSLQGNYPLELAMFVVEMIDNCIKKDPTSRPAMHEIVPSLSITLNSSLSWEKSVKI 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00042 630 SUPERFAMILY Protein kinase-like (PK-like) 333 614 IPR011009 -
Sebi131g00042 630 CDD LysM 187 230 IPR018392 -
Sebi131g00042 630 FunFam PTI1-like tyrosine-protein kinase 3 414 628 - -
Sebi131g00042 630 MobiDBLite consensus disorder prediction 237 260 - -
Sebi131g00042 630 Gene3D Phosphorylase Kinase; domain 1 318 413 - -
Sebi131g00042 630 Pfam LysM domain 192 231 IPR018392 -
Sebi131g00042 630 Gene3D LysM domain 186 243 IPR036779 -
Sebi131g00042 630 Gene3D Transferase(Phosphotransferase) domain 1 415 626 - -
Sebi131g00042 630 ProSiteProfiles Protein kinase domain profile. 297 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00042 630 ProSiteProfiles LysM domain profile. 186 230 IPR018392 -
Sebi131g00042 630 Pfam Protein kinase domain 373 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00042 630 SMART serkin_6 355 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00042 630 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 627 - -
Sebi131g00042 630 SMART LysM_2 187 231 IPR018392 -
Sebi131g00042 630 SMART LysM_2 122 167 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00042 Sebi-Chr131 498030 499922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00042 14 627 Receptor kinase-like Gene Family AT2G23770 43.840 1.33e-171 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Sebi131g00042 Pkinase 4.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00042 - - gmx:100815842 939.102