Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00041 ATGGCTTCTCGGGGTACCAATTCCTTCCTTTGGCACTTTGTTTTGGCTATTGTGATTGCCACCCTTTTCATTCCAAACCTTTGTTCAGCCAAGCAATCCAAGATAATTGGCTTGAAAATGAATGTGATTGATAGATGCTGGAGACCCAATCCTGAATGGAGGAGGCATCGATCTCAACTAGCCACTTGCTCTGTTGGCTATGCTGGCAAGATGACAAGCAACATTGGTAAGGACCTCGTCCTTTATAAAGTTACTCACCCCAGTGATGACCCAATAAACCCCAGGCCTGGTACCTTGAGGTACGGAGCTTCTGTAATTCAAGGTAAAGTGTGGATCAGATTCCAAAGAGACATGCACATTAGACTCCAGAGACCCCTTCTCATTAGTAGTTTCACCACTATTGATGGTCGAGGCGTCAACGCTACCAATGTAATCATCCATGGTATTCGGGTTCATAATTGCAAAGCTCAAGCCCCTGGATTGGTGGTTGGGCCTAATGGAAAGTTAATTCCTTTGGGCCAAGTAGATGCAGATGCAATTAGATTGGTTACCGCTTCAAATATTTGGATTGATCATAATACCCTTTATGATTGTGAAGATGGGCTTCTTGATGTCACAAGGGGTTCCACTAATGTGACTATATCCAATAACTGGTTCAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGGTATGTAAGAGACCAAAACATGAAGGTTACCGTTGTGTACAACCATTTTGGACCCAATTGCAACCAGCGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAATAATCTTTACCAGGGTTGGGTGCAATACGCGATCGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAAGCTAACCTCTTTATAGCACCGAAATCTGGGAGTAAGGAGGTAACATGGAGAAAAGTTAGTCACAGAAATGGAGACAGGTGGGAATTTCATTCAGTGAGGGATGCTTTTGAAAATGGAGCATCCTTCGCAGTAACAAAAGGAGGACGTGTCCCAGCACCGAATTATAGCAAGGAACAAGATTTTGAGGTTGTTGATGTCAAATGTGTGAGATCATTGGCAAAATGGGCAGGCGCATTACGATGCACTAAAACCTCACTATGTTGA 1137 0.4398 MASRGTNSFLWHFVLAIVIATLFIPNLCSAKQSKIIGLKMNVIDRCWRPNPEWRRHRSQLATCSVGYAGKMTSNIGKDLVLYKVTHPSDDPINPRPGTLRYGASVIQGKVWIRFQRDMHIRLQRPLLISSFTTIDGRGVNATNVIIHGIRVHNCKAQAPGLVVGPNGKLIPLGQVDADAIRLVTASNIWIDHNTLYDCEDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPKSGSKEVTWRKVSHRNGDRWEFHSVRDAFENGASFAVTKGGRVPAPNYSKEQDFEVVDVKCVRSLAKWAGALRCTKTSLC 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00041 378 Pfam Pectate lyase 139 295 IPR002022 -
Sebi131g00041 378 Gene3D - 40 371 IPR012334 -
Sebi131g00041 378 PRINTS Pollen allergen Amb family signature 256 275 IPR018082 -
Sebi131g00041 378 PRINTS Pollen allergen Amb family signature 349 372 IPR018082 -
Sebi131g00041 378 PRINTS Pollen allergen Amb family signature 318 342 IPR018082 -
Sebi131g00041 378 PRINTS Pollen allergen Amb family signature 278 297 IPR018082 -
Sebi131g00041 378 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Sebi131g00041 378 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Sebi131g00041 378 PANTHER PECTATE LYASE 18-RELATED 38 375 IPR045032 GO:0030570
Sebi131g00041 378 SUPERFAMILY Pectin lyase-like 40 334 IPR011050 -
Sebi131g00041 378 SMART amb_all 117 301 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00041 Sebi-Chr131 485919 487441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00041 71 305 Polysaccharide Lyase AT5G09280 70.161 2.16e-134 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00041 K01728 - gmx:100780437 640.958