Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00040 ATGAATGTGATTGATAGATGCTGGAGACCCAATCCTGAATGGAGGAGGAATCGATCTCAACTAGCCACTTGCTCTGTTGGCTATGCTGGCAAGATGACAAGCAACATTGGTAAGGACCTCGTCCTTTATAAAGTTACTGACCACAGCGATGACCCAATAAACCCCAGACCTGGTACCTTGAGGTATGGAGCTTCTGTAATTCAAGGTAAAGCTACCAATGTAATCATCCATGGTATTCGGGTTCATAATTGCAAAGCTCAAGCCCCTGGATTGGTGGTTGGGCCTAATGGAAAGTTAATTCCTTTGGGCCAAGTAGATGCAGATGCAATTAGATTGGTTACCGCTTCAAATATTTGGATTGATCATAATACCCTTTATGATTGTGAAGATGGGCTTCTTGATGTCACAAGGGGTTCCACTAATGTGACTATATCCAATAACTGGTTCAGAAACCAAGACAAGGTTATGCTTCTTGGGCATGATGATGGGTATGTAAGAGACCAAAACATGAAGGTTACCGTTGTGTACAACCATTTTGGACCCAATTGCAACCAGCGCATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAATAATCTTTACCAGGGTTGGGTGCAATACGCGATCGGTGGAAGCATGGAACCTAGCCTCAAAAGTGAATCTAACCTCTTTATAGCACCGAAATCTGGGAGTAAGGAGGTAACATGGAGAAAAGTTAGTCATAGAAATGAAGACAGGTGGGAATTTCATTCAGTGAGGGATGCTTTTGAAAATGGAGCATCATTCGCGGTAACAAAAGGAGGACGTGTCCCAGCGCCGAATTATAGCAAGGAACAAGATTTTGAGGTTGTTGATGTCAAATGTGTGAGATCATTGACAAAATGGGCAGGCGCATTACGATGCACTAAAACCTCACTATGTTGA 927 0.4326 MNVIDRCWRPNPEWRRNRSQLATCSVGYAGKMTSNIGKDLVLYKVTDHSDDPINPRPGTLRYGASVIQGKATNVIIHGIRVHNCKAQAPGLVVGPNGKLIPLGQVDADAIRLVTASNIWIDHNTLYDCEDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSESNLFIAPKSGSKEVTWRKVSHRNEDRWEFHSVRDAFENGASFAVTKGGRVPAPNYSKEQDFEVVDVKCVRSLTKWAGALRCTKTSLC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00040 308 Pfam Pectate lyase 65 225 IPR002022 -
Sebi131g00040 308 SUPERFAMILY Pectin lyase-like 23 304 IPR011050 -
Sebi131g00040 308 SMART amb_all 35 231 IPR002022 -
Sebi131g00040 308 Gene3D - 67 301 IPR012334 -
Sebi131g00040 308 Gene3D - 1 66 IPR012334 -
Sebi131g00040 308 PANTHER PECTATE LYASE 18-RELATED 1 69 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00040 Sebi-Chr131 481934 483341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00040 32 235 Polysaccharide Lyase AT5G09280 62.903 7.23e-114 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00040 K01728 - gmx:100780437 522.702