Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi131g00036 | ATGGCGAGTGGTTTTGGTGAATCAACGAGAGCGTCTTCTCCGAGCCCATCCTGCTCGGGGAACAGTCCCAACGATGCTGGTGATTTCGAATGCAACATATGCTTCGATTTGGCTCAAGATCCAGTGATCACTCTCTGTGGCCATCTATTTTGTTGGCCATGCCTTTATAGGTGGCTCCATCATCACTCCCATTCACAAGAATGCCCCGTTTGCAAGGCCCTCGTTCAGGAAGAGAAATTGGTTCCACTCTATGGAAGGGGCAAAACACAGACTGATCCCAGGACCAAATCATACCCTGGAATGGAGATCCCTCACCGTCCTGCGGGGCAGAGGCCCCAAACGGCGCCACCCCCTCCTCCTCCTGAAGCCAATCCATTTGGGAATTATGGATTTGGATTGATGGGGGGATTCATTCCCATGGCTACAGCTAGGATTGGAAACTTCACGCTTTCCACTGCTTTTGGGGGTTTTATCCCATCTCTGCTCAATATTCACTTCCATGGCTTCCAGGATGCCACTGTCTATGGGACAACGTCTGGTTATCCCTTTGGGGGGTTTAACACGTATCATGGCGGGAACTCACGAGGTTTTTCACAGGCTACTGGTCAAGTGCAGCGGCAAGAGGACAATATTTTGAAGAATCTGCTTTTGTTGATTGGATTTCTTGTTCTTCTTACGATCATTTTTGTATGGTAA | 696 | 0.4914 | MASGFGESTRASSPSPSCSGNSPNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQTDPRTKSYPGMEIPHRPAGQRPQTAPPPPPPEANPFGNYGFGLMGGFIPMATARIGNFTLSTAFGGFIPSLLNIHFHGFQDATVYGTTSGYPFGGFNTYHGGNSRGFSQATGQVQRQEDNILKNLLLLIGFLVLLTIIFVW | 231 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi131g00036 | 231 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sebi131g00036 | 231 | Pfam | Zinc finger, C3HC4 type (RING finger) | 30 | 71 | - | - | |
Sebi131g00036 | 231 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 19 | 225 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Sebi131g00036 | 231 | MobiDBLite | consensus disorder prediction | 86 | 125 | - | - | |
Sebi131g00036 | 231 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 94 | IPR013083 | - | |
Sebi131g00036 | 231 | SMART | ring_2 | 31 | 71 | IPR001841 | - | |
Sebi131g00036 | 231 | ProSiteProfiles | Zinc finger RING-type profile. | 31 | 72 | IPR001841 | - | |
Sebi131g00036 | 231 | MobiDBLite | consensus disorder prediction | 110 | 125 | - | - | |
Sebi131g00036 | 231 | ProSitePatterns | Zinc finger RING-type signature. | 46 | 55 | IPR017907 | - | |
Sebi131g00036 | 231 | FunFam | E3 ubiquitin-protein ligase RNF185 isoform X2 | 14 | 85 | - | - | |
Sebi131g00036 | 231 | SUPERFAMILY | RING/U-box | 27 | 84 | - | - | |
Sebi131g00036 | 231 | CDD | RING-HC_AtRMA-like | 29 | 73 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi131g00036 | Sebi-Chr131 | 421148 | 421843 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi131g00036 | 21 | 229 | C3H Transcription Factor Family | AT2G23780 | 63.380 | 1.53e-89 | 261 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi131g00036 | K10666 | - | gmx:100814783 | 411.379 |