Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00026 ATGAACCATCAACCTATCCAAGACCATATGATGCTCATCTCTCAGTTATACCCTGCTAGTGCATACACTCAAATAATTTCTCAACAAGGGGAGAAGAAGCCAAGACGGCGTCGTAACAAGAAGAGCAAAGGAGGAGAAAACGGGGGCTTGGAAGCTCACAAGAAGAGGAAGCTGAGTATAGAGCAAGTTAATCTACTTGAACAAAATTTTGGAAATGAACACAAACTTGAGTCTGAGAGGAAGGACAGGCTCGCAATGGAGCTTGGTTTGGATCCTCGTCAAGTTGCCGTGTGGTTTCAAAACAGAAGAGCTCGTTGGAAGAACAAAAAATTGGAAGAAGAGTACTCCATCCTTAAAAAATCCCACGAAACCACCTTGCTCGAGAAATGTCGCCTGGAAACTGAGGTGTTGAAGCTGAAGGAGCAACTCTCAGAGGCAGAGAAGGAGATTCAGCGGCTGCTAGAGCGTGGTGGTGATGTAGTCCCAAGCAACAGCTGCAGTTCGTCACAGTCACAATCAATGGAAGCGGTGGACCCACCATTTCTTGGAGAATTTGGGGTTGATGGATATGATGATGATGTGTTTTACGTGCCTGAGACCCATTACATCAATGGCATGGAATGGATTAATCTGTACATGTAA 642 0.4517 MNHQPIQDHMMLISQLYPASAYTQIISQQGEKKPRRRRNKKSKGGENGGLEAHKKRKLSIEQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSILKKSHETTLLEKCRLETEVLKLKEQLSEAEKEIQRLLERGGDVVPSNSCSSSQSQSMEAVDPPFLGEFGVDGYDDDVFYVPETHYINGMEWINLYM 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00026 213 Coils Coil 101 121 - -
Sebi131g00026 213 Gene3D - 45 118 - -
Sebi131g00026 213 SUPERFAMILY Homeodomain-like 53 118 IPR009057 -
Sebi131g00026 213 ProSitePatterns 'Homeobox' domain signature. 84 107 IPR017970 GO:0000981|GO:0006355
Sebi131g00026 213 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 170 IPR045224 GO:0003700
Sebi131g00026 213 MobiDBLite consensus disorder prediction 27 54 - -
Sebi131g00026 213 FunFam homeobox-leucine zipper protein ATHB-40 48 117 - -
Sebi131g00026 213 CDD homeodomain 54 110 IPR001356 GO:0003677
Sebi131g00026 213 SMART HOX_1 52 113 IPR001356 GO:0003677
Sebi131g00026 213 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Sebi131g00026 213 Pfam Homeodomain 54 108 IPR001356 GO:0003677
Sebi131g00026 213 Coils Coil 129 156 - -
Sebi131g00026 213 PRINTS Lambda-repressor HTH signature 80 89 IPR000047 GO:0003677
Sebi131g00026 213 PRINTS Lambda-repressor HTH signature 89 105 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00026 Sebi-Chr131 259595 261359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00026 1 213 Homeobox Transcription Factor Family AT4G36740 58.108 1.77e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi131g00026 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00026 K09338 - gmx:100809616 342.428