Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00020 ATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAGGGCACCACCTAAGAAGAAGAGAAACCTTCCAGGAATGCCAGATCCAGATGCAGAGGTGATTGCTCTGTCTCCGAAGACCCTTATGGCCACGAACCGATTCGTGTGTGAAATATGCAACAAGGGTTTTCAGAGGGATCAGAATCTTCAGCTTCATCGACGGGGTCACAATCTGCCATGGAAGCTTAGACAGAGGTCAAGCAATGAGGTGAGGAAGAGGGTGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCAGTTCAATCGGATTGGAAAGCTCACTCCAAGATTTGCGGTACCAGAGAGTACAAATGCGATTGTGGGACTTTGTTTTCAAGAGGAAAGTGCAAGATCTCAGACTCAGCCTGCTTCAAAGGCTAGTCCAGAGTCAGATTCCAAAGTTGTAACTGGCGATTCATCACCTCCTCCTCCTGCGGCGGCGCCGCCGCTGTCACCCGCCGCCTCAGGCTCCAGCCCCGCCAAGTTACCAGAAATTTCACCAAAAATCATAGAGGAACCGGCAGCCAATACTGCTATGAATGGGAGCTGTAGTAGCAGCAGCACTAGCACTGGCTCAACTAGCAATAACAATGGTAGTACTAGCAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACTGCATCAGGAACTCTTCAATCCCAAACTCCAGCATTCCCTGACCTAATTACGGCCATGGCGCATCCAGCAGACCTCTCAGGGCCTCCATCTTCTGAGTCCATTTCTCTGTGCCTCGCCACCAATCACGCGTCATCCATTTTAGAAACAGGAGGGAAGGAGCGCCGCCAGTACGCCCCACCACCACAGCCAGCTATGTCCGCCACTGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCTGCAACAAATACCTCACTGCTTTGCAGCTTAGGCATAGTACCATCTTCTGGTTCGTCATCACCAGGTCAGCAAGATAGTTTGCAATGGGGTCAAAGGCCAGTAGAACCAGAGAGTGCCTCAGTTCCTGCAGCGCTTGGACTTGGTCTTTCCCTATGA 1137 0.5101 MFPQLQGKLACLPLAIRQCPQRAPPKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSNEVRKRVGLRSTSAENTARRSGNATSAPRNTQFNRIGKLTPRFAVPESTNAIVGLCFQEESARSQTQPASKASPESDSKVVTGDSSPPPPAAAPPLSPAASGSSPAKLPEISPKIIEEPAANTAMNGSCSSSSTSTGSTSNNNGSTSSSVFASLFASSTASGTLQSQTPAFPDLITAMAHPADLSGPPSSESISLCLATNHASSILETGGKERRQYAPPPQPAMSATALLQKAAQMGAAATNTSLLCSLGIVPSSGSSSPGQQDSLQWGQRPVEPESASVPAALGLGLSL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00020 378 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 77 IPR013087 -
Sebi131g00020 378 MobiDBLite consensus disorder prediction 211 235 - -
Sebi131g00020 378 MobiDBLite consensus disorder prediction 341 378 - -
Sebi131g00020 378 MobiDBLite consensus disorder prediction 151 171 - -
Sebi131g00020 378 MobiDBLite consensus disorder prediction 151 235 - -
Sebi131g00020 378 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Sebi131g00020 378 SUPERFAMILY beta-beta-alpha zinc fingers 53 78 IPR036236 -
Sebi131g00020 378 MobiDBLite consensus disorder prediction 341 360 - -
Sebi131g00020 378 Gene3D Classic Zinc Finger 35 114 - -
Sebi131g00020 378 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 146 344 IPR031140 -
Sebi131g00020 378 MobiDBLite consensus disorder prediction 86 123 - -
Sebi131g00020 378 MobiDBLite consensus disorder prediction 98 123 - -
Sebi131g00020 378 FunFam protein indeterminate-domain 12-like 34 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00020 Sebi-Chr131 202425 204545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00020 26 376 IDZ Gene Family AT5G66730 39.573 5.53e-61 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi131g00020 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00020 K25869 - gmx:100806404 367.466