Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00009 ATGTCTTCCACTCCTCATGACAATTCTCCTGATAACTCCACCCCTGATGACTCCACACCTGATAACAGCACCCCTGATGATGCTGATCACTCTTCTTCCCCACCATCACCACCACCACCTTCAGAATCACCACCTCCACCATCACAATCACAATCACCACCACCACCATCGGGAAATTCCTCACCCCCTCCATCTCCACCCCCACCTTCTGGAGGCAATTCATCCCCTTCCCCTCCATCACCCAATTCGCAGTCACCTCCTCCTCCAGTGTCTGGGTCGGGCCATTCTCCACCCACATCTGGCTCCGGCTCTGGATCACCCTCACCTCCACACAAATCATTACCAACACAATCATCCTCTGAAAACTCTAATAACAACAATGATGGTAACAACAACGGTGGAGATGATAACAGTAAGGCAATAATTGGAGCAGTGCTTGGTGTAGGCAGCGTTCTTCTCATTTTGGTCATCGTTTGTGTTGTCTGCGCGAGGAAGAAGAAAAAAAAGCAAATGTACTATTATGGTCCTGGAGATCCCTCTATGGGAAAAGTGAGTAACTACTACAACAGTGGGCAACATCCAAATTACTATGGAGGTCCACATGGGGACCATGTTGTGAGGGTACAAAATGGAATGGGTCCTAATGGTGGTGGTTGGGGTGCTCCACCACCTCCACCTCCACTAATGAATAGTGCTGATATGAGCTCCAATTACTCAACGGGACCACCCCCTCTACCTCCTCCCTCACCAGGCCTTGCTCTTGGCCTCAAAGGGGGTACCTTCAGTTATGAGGAATTGGCAAGTGCCACAGAAGGGTTTACTGATGCTAATTTGATAGGACAGGGTGGCTTTGGTTATGTCCATAAGGGTGTATTGCCTACTGGAAAGGAAGTGGCAGTTAAGAGTTTGAAATCAGGTAGTGGGCAAGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATTAGCCGTGTTCATCATCGCCATCTTGTGTCACTTGTTGGATACTGTATTGCCGGTGGGCAGAGAATGCTGGTCTATGAATTTATTCCCAATAACACTTTAGAATATCACCTTCATGGAAAGGGTAGACCTACCATGGACTGGCCTACTAGAATGCGGATTGCAATAGGCTCTGCTAAAGGGCTTGCCTATCTGCATGAAGACTGCCATCCTCGTATAATTCATCGTGATATTAAAGCTGCGAATGTTCTTATTGATGACAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAATTGACTACTGATAATAATACTCATGTATCAACTCGTGTCATGGGAACTTTCGGGTATCTAGCCCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTTTTGGAACTCATTACTGGGAAGCGACCTGTGGATGTCTCAAATGCTATGGATGACAGTTTAGTGGACTGGGCTCGACCATTACTAACTCGTGGATTGGAGGAGGATGGCAACTTTGGAGAGTTGGTGGATCTATTTTTGGAGGGAAACTACAATCCTCAAGAATTGACAAGGATGGCCGCATGCGCTGCTGCTAGCATTCGTCATTCCGCCAAGAAGCGTCCTAAAATGAGTCAGATTGTAAGAACATTGGAAGGTGATGTCTCACTGGATGACTTGAAGGAGACGATGAATAAGCCCGGGCATAGCACTATTTACAACACTTCATCTGGGAGCTCAGAGTATGATACAATGCAATACAATGCTGATTTGCAGAAGTTCAGAAAAGCAGTGTTTTCTAGCCAGGAATTTGGCACCAGCAGCTGCTCTAGTGGCGATATGAGCCAAACCCCGCAGAAACAACCACATGTGCTTTAG 1863 0.4681 MSSTPHDNSPDNSTPDDSTPDNSTPDDADHSSSPPSPPPPSESPPPPSQSQSPPPPSGNSSPPPSPPPPSGGNSSPSPPSPNSQSPPPPVSGSGHSPPTSGSGSGSPSPPHKSLPTQSSSENSNNNNDGNNNGGDDNSKAIIGAVLGVGSVLLILVIVCVVCARKKKKKQMYYYGPGDPSMGKVSNYYNSGQHPNYYGGPHGDHVVRVQNGMGPNGGGWGAPPPPPPLMNSADMSSNYSTGPPPLPPPSPGLALGLKGGTFSYEELASATEGFTDANLIGQGGFGYVHKGVLPTGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCIAGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDVSNAMDDSLVDWARPLLTRGLEEDGNFGELVDLFLEGNYNPQELTRMAACAAASIRHSAKKRPKMSQIVRTLEGDVSLDDLKETMNKPGHSTIYNTSSGSSEYDTMQYNADLQKFRKAVFSSQEFGTSSCSSGDMSQTPQKQPHVL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00009 620 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 147 592 IPR047117 -
Sebi131g00009 620 Gene3D Transferase(Phosphotransferase) domain 1 349 566 - -
Sebi131g00009 620 SUPERFAMILY Protein kinase-like (PK-like) 256 546 IPR011009 -
Sebi131g00009 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 393 405 IPR008271 GO:0004672|GO:0006468
Sebi131g00009 620 MobiDBLite consensus disorder prediction 210 244 - -
Sebi131g00009 620 MobiDBLite consensus disorder prediction 95 134 - -
Sebi131g00009 620 ProSiteProfiles Protein kinase domain profile. 273 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00009 620 SMART serkin_6 273 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi131g00009 620 MobiDBLite consensus disorder prediction 1 134 - -
Sebi131g00009 620 FunFam proline-rich receptor-like protein kinase PERK1 251 348 - -
Sebi131g00009 620 PRINTS Proline rich extensin signature 13 25 - -
Sebi131g00009 620 PRINTS Proline rich extensin signature 75 92 - -
Sebi131g00009 620 PRINTS Proline rich extensin signature 35 56 - -
Sebi131g00009 620 PRINTS Proline rich extensin signature 56 72 - -
Sebi131g00009 620 MobiDBLite consensus disorder prediction 600 620 - -
Sebi131g00009 620 Pfam Protein tyrosine and serine/threonine kinase 277 483 IPR001245 GO:0004672|GO:0006468
Sebi131g00009 620 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Sebi131g00009 620 MobiDBLite consensus disorder prediction 31 94 - -
Sebi131g00009 620 FunFam Proline-rich receptor-like protein kinase PERK1 349 557 - -
Sebi131g00009 620 Gene3D Phosphorylase Kinase; domain 1 254 348 - -
Sebi131g00009 620 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00009 Sebi-Chr131 107855 111525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00009 131 610 Trihelix Transcription Factor Family AT1G70460 50.916 2.54e-154 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Sebi131g00009 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00009 - - gmx:100777163 782.326