Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00008 ATGGGTGATTTCAACAACGATGCCCTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGTCCAGAACCGCGCCAACGTCCTTCAGCTCAAGCTGATTGGACAGAGTCACCCAACTGGTCTCACAGCGAACCTCTTGAGGCTCTTTGAGCCTCGACCTCCGTTGGAGTATAAACCACCTCCAGAGAAAAGGAAATGTCCACCATTAACAGGGATGGCACAATTTGTAAGTAAATTTGCCGAGCCTGGCGATCCAGAATACGCTCCACCTGTCCAAAAGGCTGAAACTCCTGCAGAAAAAAGAGCCAGAATACACAAACTAAGACTAGAGAAGGGAGCAGCAAAGGCGGCTGAGGAGCTAGAGAAATATGATCCACATAATGACCCAAATGTATCCGGAGATCCATACAAGACATTGTTTGTGGCCAAACTCAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAAAGGGTTCGATTAGTTACTGACAAAGAGACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTCGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGACGCCTAGGCGGTGGGCTTGGTACTACCAGAGTTGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAACAACAGTCTCGATCTGAAGAACCAAGAGTGCGGGAGGATCGACATGGTGATCGAGGACGCTCACGTGATAGGGAGTCTGATTATGACCGTGTCGAATCTAAACAGGAGAGGGACCGGCATGGTGAAAGGGATCGTGACTATGAGCCTGAAGATGATCGTGGATGGTATAACCAATCTGAGCGTGGACATAGGCATGCGGACCCTGATCATGACTCTGAGCAATATGACCACTATGAGCATCATGGAGGACGAGGGCAGTATGATCATGGAGATGATCATTACAATCAATACCCTGACCATGATAGGATGGATGGTGACTACCATACAGGACGTGCAACATCTGAATCACGTGAAAAGGAAACAAATCGTGATGTGGATCGTGATTCTCGTCCCTCAGAGAGATCTCATTCCCGGGAGTATGATTACTAG 1179 0.4809 MGDFNNDALMRNQNAAVQARTKVQNRANVLQLKLIGQSHPTGLTANLLRLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYAPPVQKAETPAEKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQSRSEEPRVREDRHGDRGRSRDRESDYDRVESKQERDRHGERDRDYEPEDDRGWYNQSERGHRHADPDHDSEQYDHYEHHGGRGQYDHGDDHYNQYPDHDRMDGDYHTGRATSESREKETNRDVDRDSRPSERSHSREYDY 392
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00008 392 SMART rrm1_1 140 213 IPR000504 GO:0003723
Sebi131g00008 392 Gene3D - 126 251 IPR012677 -
Sebi131g00008 392 SUPERFAMILY RNA-binding domain, RBD 127 239 IPR035979 GO:0003676
Sebi131g00008 392 MobiDBLite consensus disorder prediction 221 392 - -
Sebi131g00008 392 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 60 310 - -
Sebi131g00008 392 FunFam U1 small nuclear ribonucleoprotein 70 kDa 126 251 - -
Sebi131g00008 392 CDD RRM_snRNP70 138 228 IPR034143 GO:0030619
Sebi131g00008 392 MobiDBLite consensus disorder prediction 242 392 - -
Sebi131g00008 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Sebi131g00008 392 MobiDBLite consensus disorder prediction 82 102 - -
Sebi131g00008 392 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 42 130 IPR022023 -
Sebi131g00008 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi131g00008 Sebi-Chr131 100479 104532 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00008 139 212 C2H2 Transcription Factor Family AT2G19380 31.081 8.77e-07 48.9