Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi131g00008 | ATGGGTGATTTCAACAACGATGCCCTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGTCCAGAACCGCGCCAACGTCCTTCAGCTCAAGCTGATTGGACAGAGTCACCCAACTGGTCTCACAGCGAACCTCTTGAGGCTCTTTGAGCCTCGACCTCCGTTGGAGTATAAACCACCTCCAGAGAAAAGGAAATGTCCACCATTAACAGGGATGGCACAATTTGTAAGTAAATTTGCCGAGCCTGGCGATCCAGAATACGCTCCACCTGTCCAAAAGGCTGAAACTCCTGCAGAAAAAAGAGCCAGAATACACAAACTAAGACTAGAGAAGGGAGCAGCAAAGGCGGCTGAGGAGCTAGAGAAATATGATCCACATAATGACCCAAATGTATCCGGAGATCCATACAAGACATTGTTTGTGGCCAAACTCAGTTATGAGACCACTGAGAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAAAGGGTTCGATTAGTTACTGACAAAGAGACAAATAAGCCCAGGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTCGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGACGCCTAGGCGGTGGGCTTGGTACTACCAGAGTTGGGGGTGAAGAAGTTAATCAGCGACATTCTGGGAGGGAACAACAGTCTCGATCTGAAGAACCAAGAGTGCGGGAGGATCGACATGGTGATCGAGGACGCTCACGTGATAGGGAGTCTGATTATGACCGTGTCGAATCTAAACAGGAGAGGGACCGGCATGGTGAAAGGGATCGTGACTATGAGCCTGAAGATGATCGTGGATGGTATAACCAATCTGAGCGTGGACATAGGCATGCGGACCCTGATCATGACTCTGAGCAATATGACCACTATGAGCATCATGGAGGACGAGGGCAGTATGATCATGGAGATGATCATTACAATCAATACCCTGACCATGATAGGATGGATGGTGACTACCATACAGGACGTGCAACATCTGAATCACGTGAAAAGGAAACAAATCGTGATGTGGATCGTGATTCTCGTCCCTCAGAGAGATCTCATTCCCGGGAGTATGATTACTAG | 1179 | 0.4809 | MGDFNNDALMRNQNAAVQARTKVQNRANVLQLKLIGQSHPTGLTANLLRLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYAPPVQKAETPAEKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVTDKETNKPRGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQSRSEEPRVREDRHGDRGRSRDRESDYDRVESKQERDRHGERDRDYEPEDDRGWYNQSERGHRHADPDHDSEQYDHYEHHGGRGQYDHGDDHYNQYPDHDRMDGDYHTGRATSESREKETNRDVDRDSRPSERSHSREYDY | 392 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi131g00008 | 392 | SMART | rrm1_1 | 140 | 213 | IPR000504 | GO:0003723 | |
Sebi131g00008 | 392 | Gene3D | - | 126 | 251 | IPR012677 | - | |
Sebi131g00008 | 392 | SUPERFAMILY | RNA-binding domain, RBD | 127 | 239 | IPR035979 | GO:0003676 | |
Sebi131g00008 | 392 | MobiDBLite | consensus disorder prediction | 221 | 392 | - | - | |
Sebi131g00008 | 392 | PANTHER | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD | 60 | 310 | - | - | |
Sebi131g00008 | 392 | FunFam | U1 small nuclear ribonucleoprotein 70 kDa | 126 | 251 | - | - | |
Sebi131g00008 | 392 | CDD | RRM_snRNP70 | 138 | 228 | IPR034143 | GO:0030619 | |
Sebi131g00008 | 392 | MobiDBLite | consensus disorder prediction | 242 | 392 | - | - | |
Sebi131g00008 | 392 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | IPR000504 | GO:0003723 | |
Sebi131g00008 | 392 | MobiDBLite | consensus disorder prediction | 82 | 102 | - | - | |
Sebi131g00008 | 392 | Pfam | U1 small nuclear ribonucleoprotein of 70kDa MW N terminal | 42 | 130 | IPR022023 | - | |
Sebi131g00008 | 392 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 210 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi131g00008 | Sebi-Chr131 | 100479 | 104532 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi131g00008 | 139 | 212 | C2H2 Transcription Factor Family | AT2G19380 | 31.081 | 8.77e-07 | 48.9 |