Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi131g00004 ATGGAGGCGAATAACAAAGTGAAGAACGAAGATCCTGCAGCAGAGTCTCCAACATCGGTTCTAGAAGACGAGGATGTCTGCGGCAAGAACGGGGAAATTAAGTCGGAGGAAGAGGTGCTTGCAGATATTAGGGATGATGGGTCCTCCTTTATATCAAGTTCGATGGCAGAGGAGGAAGAGAAGTTGCTCGAAGCTCGGGTCAAGGAAGAGGAGGCTCAGCGTGAGGATGCACCTGACCTCAATGAGACACAGTTTGACAAACTGGATGAGCTTTTAACGCAAACCAAACTGTACTCTGAGTTTCTTTTGGAGAAAATGGATGACATCACGCTTACTGGGGGTGAACAAGAGGATAAGGTTGAGGAAGAGAGCAAACCAGCTGCTAAAAAGAAGGGCCGTGGATCCAAAAGAAAAAAAGCTTCACAATGCAATACAGGGAAGGCCAAAAGGGCAGTTGCAGCCATGCTTACAAGATCTAAAGAAAATGAGAGGACTGAAGATATGAACATGAGTGAGGAAGAAAGAATGGAGAAAGAACAGAAGGAGCTTATGCCTTTACTGACAGGTGGAAAATTGAAGTCTTATCAACTGAAGGGAGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAAACAATTGGGTTTATCTCACATCTAAAAGGGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAATGAGATTTCTAGGTTTGCCCCATCACTCCCTGCTATTATCTACCATGGTAACAAGAAACAGAGAGATGAGATCCGAAGGCAACATATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTAATAACTTCTTATGAGGTTGCTTTAAATGATGCTAGGAAAGGATTGAGTTCATACCATTGGAAATATCTTGTTGTTGATGAGGGTCACAGACTCAAAAACTCAAAATGCTTATTGGTGAAGAGATTGAAATACATGAAAGTAGAAAATAAGCTGCTGCTAACTGGGACACCTCTTCAGAATAACTTGGCGGAGCTGTGGTCATTGTTGAACTTCATTTTACCTGATATCTTCTCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAATAATGGAACATCAAAGGAAGAGTTGGAAGAGAAAAGAAGAACCCAAGTGGTAGCAAAGCTTCATGCAATTCTTCGGCCCTTTCTTTTGCGTAGGATGAAGTCTGATGTTGAGCTGATGTTGCCACGGAAAAAGGAGATAATTATCTATGCTAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAATTAATGCATCATTGGGGAAATATTTAACAGAAAAACTGTCCGTTGCATCTGTTGCAATAAAAATTCATAATTTGGTCATTCAACTAAGGAAGGTCTGCAACCATCCTGACCTCTTAGAGTCAGCCTTTGATGGTTCATATTTTTATCCTCCTGTAAATGATATAATTGAACAATGCGGAAAGTTCCAATTGCTTGACCGATTGTTAGAACGGTTATTCGCACGGAATCACAAAGTTCTGATCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAGGGCCTTGAAGTTTGCAGGATTGATGGTGCAGTGAAACTGGATGAAAGGAAACGGCAGATCCAGGAATTCAATGATGAAAACAGCAATTGCAGAATCTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCTGCTGACACTTGCATTCTTTATGACAGTGACTGGAATCCTCAAATGGATTTACAAGCCATGGATAGATGCCATAGAATAGGTCAAACAAAGCCTGTTCATGTTTACAGGCTTGCAACTGCTCAATCTGTAGAGGGTCGCATGTTAAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGAGAAAGGACAGTTTCATCAAGAACGTGCAAAGCCTGCCAGTATGGATGAATTGGAGGAAGAGGATATTTTGGCAATGCTTCGAGGAGAAGACGAAACAGATGAAGACAAAATGATACAAATAGGTATTAGTGATGAAGACCTGGAGAAGATCTTGGATCGCAGTGATCTTGTTGTCAATAGCTCAAACGCTCCGGAAAGTACCTTTCCCCTTAAAGGGCCTGGGTGGGAGGTGGTGATTCCATCTGCGTCTGGGGGCATGCTTTCTACCCTTAACAGCTAA 2271 0.4174 MEANNKVKNEDPAAESPTSVLEDEDVCGKNGEIKSEEEVLADIRDDGSSFISSSMAEEEEKLLEARVKEEEAQREDAPDLNETQFDKLDELLTQTKLYSEFLLEKMDDITLTGGEQEDKVEEESKPAAKKKGRGSKRKKASQCNTGKAKRAVAAMLTRSKENERTEDMNMSEEERMEKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFISHLKGKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAIIYHGNKKQRDEIRRQHMPRTIGPKFPIVITSYEVALNDARKGLSSYHWKYLVVDEGHRLKNSKCLLVKRLKYMKVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCNNGTSKEELEEKRRTQVVAKLHAILRPFLLRRMKSDVELMLPRKKEIIIYANMTEHQKNLQDHLINASLGKYLTEKLSVASVAIKIHNLVIQLRKVCNHPDLLESAFDGSYFYPPVNDIIEQCGKFQLLDRLLERLFARNHKVLIFSQWTKVLDIMDYYFSEKGLEVCRIDGAVKLDERKRQIQEFNDENSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERAKPASMDELEEEDILAMLRGEDETDEDKMIQIGISDEDLEKILDRSDLVVNSSNAPESTFPLKGPGWEVVIPSASGGMLSTLNS 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi131g00004 756 MobiDBLite consensus disorder prediction 130 144 - -
Sebi131g00004 756 Coils Coil 162 182 - -
Sebi131g00004 756 MobiDBLite consensus disorder prediction 25 44 - -
Sebi131g00004 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 422 IPR027417 -
Sebi131g00004 756 PANTHER SNF2/RAD54 HELICASE FAMILY 44 698 - -
Sebi131g00004 756 SMART helicmild6 544 628 IPR001650 -
Sebi131g00004 756 Gene3D - 428 730 IPR027417 -
Sebi131g00004 756 SMART ultradead3 188 383 IPR014001 -
Sebi131g00004 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 372 IPR014001 -
Sebi131g00004 756 FunFam Chromatin complex subunit A 106 432 659 - -
Sebi131g00004 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 719 IPR027417 -
Sebi131g00004 756 CDD SF2_C_SNF 504 638 - -
Sebi131g00004 756 Gene3D - 193 423 IPR038718 -
Sebi131g00004 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 518 674 IPR001650 -
Sebi131g00004 756 MobiDBLite consensus disorder prediction 114 129 - -
Sebi131g00004 756 Pfam Helicase conserved C-terminal domain 517 628 IPR001650 -
Sebi131g00004 756 MobiDBLite consensus disorder prediction 114 146 - -
Sebi131g00004 756 MobiDBLite consensus disorder prediction 57 82 - -
Sebi131g00004 756 Coils Coil 53 75 - -
Sebi131g00004 756 MobiDBLite consensus disorder prediction 1 82 - -
Sebi131g00004 756 FunFam ATP-dependent DNA helicase DDM1 186 431 - -
Sebi131g00004 756 Pfam SNF2-related domain 195 492 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi131g00004 Sebi-Chr131 68056 73228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi131g00004 244 690 RAD5 or RAD16-like Gene Family AT5G05130 25.000 1.54e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi131g00004 SNF2_N 1.8e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi131g00004 K19001 - gmx:100777687 1246.49