Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi130g00098 ATGGATTGCATTGTTGCTGGTAACTCCACCTCATCTGCAGGGTCATCTTCTAAGGCAAAGAAGAGCAAGGAGAAAAAGTGTGGGAAGAAAAAGAAAAGCAAAGGAGTGATGAAGCTTTCCACTGACCCACAAAGCGTAGCAGCCAGAGAAAGAAGGCATAGAATCAGTGACCGGTTCAAGATCTTGCAGAGCATGGTCCCTGGTGGGAGTAAGATGGACACTGTGTCTATGTTAGAAGAAGCCATTCAGTACGTGAAGTTCCTCAAGACCCAGATTTGGCTTCACCAAACCATGATTAACTTTGTGGATAATCAGTATTTCCCTAATGAACACATCATTCCCCTTCAGCAAAATCCATTAGTTGATTCTGATCTGCAGGCTTTACCACAGCTACCACTCGCACAATTCTGCTTCCAAGGTGAAGATGCCACCTTTGATGAATTGATGCCACTTTGA 456 0.443 MDCIVAGNSTSSAGSSSKAKKSKEKKCGKKKKSKGVMKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIQYVKFLKTQIWLHQTMINFVDNQYFPNEHIIPLQQNPLVDSDLQALPQLPLAQFCFQGEDATFDELMPL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi130g00098 151 FunFam Transcription factor LAX PANICLE 42 105 - -
Sebi130g00098 151 Gene3D - 38 97 IPR036638 GO:0046983
Sebi130g00098 151 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 26 124 IPR045843 GO:0003700|GO:0006355
Sebi130g00098 151 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Sebi130g00098 151 MobiDBLite consensus disorder prediction 1 17 - -
Sebi130g00098 151 SMART finulus 45 94 IPR011598 GO:0046983
Sebi130g00098 151 Pfam Helix-loop-helix DNA-binding domain 49 88 IPR011598 GO:0046983
Sebi130g00098 151 MobiDBLite consensus disorder prediction 1 50 - -
Sebi130g00098 151 CDD bHLH_AtIND_like 40 99 - -
Sebi130g00098 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 103 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi130g00098 Sebi-Chr130 1543611 1544066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi130g00098 29 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.000 1.78e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi130g00098 HLH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi130g00098 - - pvu:PHAVU_010G073400g 157.147