Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi130g00044 ATGCAACCAAGGATAAGTGTTGGAGATGGTTTCCGTGTTAGTGCTGCATCAAGTAGTAATTCAAGCGGAGGATCTGAACCAGATGACATAGAGTCACTAGGTGATGTTTACATATGGGGAGAGGTTTTAGCAGATGAGGTTTCACCTGATGGAACTAAAACTCAAGTGTCTTCTAAGACAGATTTCTTGATTCCTAAGCCCTTAGATTCAAATATTGTTTTTGATGTTCGTAACATTGCATCTGGTGCACATCACCTTGCTATAGTAACTAGGAAAGGAGAGCTTTTTACTTGGGGAGAAGAATCTGAGGGAAGACTTGGTCATGGAATTGATAAAGATTTTGGCCAACCCCATCTAGTTGAGTTTCAAGGAGTTACTAATTTGGATTTTGTTGCATGTGGAGAGTTTCATACATTTGTTGTATCTAAATCTGATGATCTTTACACATGGGGTGATGGTACACATAATGTTGGACTTCTTGGCCATGGTACTGAGGCTAGCCATTGGATACCAAAGAAAGTTGATGGGGCTTTGGAAGGACTTCAAGTTGTCTCTATTGCATGTGGTACATGGCATTCAGCATTGGCAACCTCAAATGGAAAATTGTATACCTTTGGTGATGGAACATTTGGTGTCTTGGGCCATGGAGATCAAGAGAGTGTGTTGTATCCAAAGGAGGTACAATTATTAAGTGGACTAAAGACTATTAAGGTTGCATGTGGGGTATGGCACACTGCAGCTATTGTGGAGGTTATGTTTCAGTCTGGTTCAAATGTTTCATCATGGAAACTATTCACATGGGGTGATGGTGACAAATATCGTTTGGGTCATGGAAATAAGGAAACATACTTGCGACCCACCCGTGTCTCTCCACTTATTGAGTATAATTTCCACCAGATAGCATGTGGGCGCACTATGACTGTTGCTCTCACTACATCTGGTCATGTTTTTACAATGGGAAGCACTGAAAATGGTCAGTTAGGAAATCCTATGTCCGCTGGAAAAGTACCTACTCTAGTCCAAGATAAGTTGCTTGGTGAGTTTGTTGACGAAATATCATGTGGAGCACATCATGTTGCTGCCTTAACATCAAGAAGTGAACTATATACTTGGGGAAAAGGTGCTAATGGAAGATTAGGACATGGAGACATAGAAGATAGAAAAACTCCTACACTAGTGGTAGCCTTGAAAGATAGGCATATAAAAAATATCTCATGTGGCTCAAACTTTACATCTTGTGTATGCATCCATAAATGGGTCTCTGGAACTGATCAATCTGTTTGCTCTGGTTGTCGACAAGCATTTGGTTTGACAAGAAAAAGACATAATTGTTATAATTGTGGATTGGTTTACTGCCATAATTGCAGTTCAAAAAAGGCATTCAAAGCAGCATTGGCTCCAACACAAGAGAAACCTCATCGAGTGTGTGATACTTGTTATGCAAAGCTTAAAGTTTTTGAGGCTGGGGATACTTCCAAGTTTAGTGGAAAAAGTTTTCCTTCTCATTGTTCCACATATGGCAAGGAAAGATTAGGCCAGACAGCAAGTATGTCTACAAGAAAACTCTTGTCTCCCATCACTGAACCAGTGAAATATCTTGAGATAAAGAAAAATAAGCCCGGGACCAAATGTGATTCAACTTACTTTGTCCGAGCTTCTCAAGTTCCATCTCTTGTACAATTGAATGATATTGTATTTCCAAGTTCACTAAGTTCTGCTCAAAGTGTTTTGAAGCCTATTACACCTCCCAGTCCATCAGAAAGTCCTCCAACAACTCCACCTATTAATTCAAGACATGCGTCGCCATACAAGAGAAGATCAAGCCCTCCACGTTCTGCTAGTCCTAGATTTTCTGGAAGCCTTATCAGTAGTTTGAGAAAGACAAATGATGTTTTGAGCCAAGAAGTCTCCAATTTGCATAACCAAATTCGAAGTTTGGAGCAAAGAAGTGACACGAAGGGTGTGGAAATTCAAAGGATTCAGAGAAAGGCTACGGAAGCTATTGCCTTGGCTGCAGTGGAATCTTCTAATCTTAGAGAAGTAACAGAATTTATTGAATCTACTATGGATCAGGTAAAGGAAATGATTGAGAAATTACCATTAGAAATTCCAGAAAGTAAACTTTTGATTAGCGTGCATACTCGAGCTACAGACTTTCTACAAGAAATTTCAGAATCTGAAACATCTTCCTTACCATCAAATTTGGAGTCAGATCAAGAAAATACACCTAATGTACCTACTTTAGATAGTGACACTTCTAAATTGCAAGAACACAGTTTGGAAGAAAATGACGATGCTACAGGCGTTAACAGTTGTCAAGATGGAAAAAAATTCCCTGAAGAAATTAATGGTTCAAAGTTGAAGTCTGAGCAACAAGATGAACATGATACAACTGCCTCAAATAGTGACTGTTCAAATATGCAAGAAAACAAACTAGAAGAAAATGTTGATGCTGCAGGAGTTAACACTTGTCAAGATGGAAGAAATTTCCCTGAAGAAATTAATGGATCAAAATTAGAGTCTGAGCAACAACATGATATAACTGCCTTAGATAGTGATTGTTCAAAACTGAAAGAACAAATATTAGAAGAAAATGTTGATGCTGCTAAAGTTGATACTTCTCAAGATGGAAGAAATTTCCTTGAAGAAATTAATGGATCAAAGTCTGAGTCTGAGCAACAAGATGCACCTACTACACCTTCCTCAAATAGTGACTGTTCAAAACTACAAGAAAACAGACTAGAAGAAAATGTTGATGTTGTAGGAGTTGACCTTTGTCAAGATGGAGGGAATTTCCTTAAAGAAAATATTATATCAAAGTTAGAGGCTAAGCAGCAAAATGCACCTAATATACCTGCCTCAGATAGTGGCACTTTTCAACTCCAAGAACATAGACTAGAAGAAAATGTTGATGTTGCAGAAGCTGATCAATCTTCAGAAAAGGGACATGTATTCCAAGAATGCAATGGATCATCTATGTCTACTGCTGAAGATGTAGTGCCTCCACAAAACTCAGAAAAATATGGTTCAAGATCACTGGATTCTTTAGGATCTGGGAGACAACGAGAAACACAAGTCATAGAAAAATTTGAACGTGGTGTTTATGTGATACTTGTGTTACAGCCTGATGGTGTCAAAAATTTTAAACAAGTTAAATTCAGTAAGCGAAGGTTCACTGAAAATGAAGCAGAAGAATGGTGGAAGCAAAACAAAGGTAGGGTTCTTAGGAAATATTGTCCATGCCATCAAAACCTAACAACTGGATCATGTAACATAACATCACATGCTAACCAAAATATTGAAGCATCTCCTTCTTAA 3318 0.3837 MQPRISVGDGFRVSAASSSNSSGGSEPDDIESLGDVYIWGEVLADEVSPDGTKTQVSSKTDFLIPKPLDSNIVFDVRNIASGAHHLAIVTRKGELFTWGEESEGRLGHGIDKDFGQPHLVEFQGVTNLDFVACGEFHTFVVSKSDDLYTWGDGTHNVGLLGHGTEASHWIPKKVDGALEGLQVVSIACGTWHSALATSNGKLYTFGDGTFGVLGHGDQESVLYPKEVQLLSGLKTIKVACGVWHTAAIVEVMFQSGSNVSSWKLFTWGDGDKYRLGHGNKETYLRPTRVSPLIEYNFHQIACGRTMTVALTTSGHVFTMGSTENGQLGNPMSAGKVPTLVQDKLLGEFVDEISCGAHHVAALTSRSELYTWGKGANGRLGHGDIEDRKTPTLVVALKDRHIKNISCGSNFTSCVCIHKWVSGTDQSVCSGCRQAFGLTRKRHNCYNCGLVYCHNCSSKKAFKAALAPTQEKPHRVCDTCYAKLKVFEAGDTSKFSGKSFPSHCSTYGKERLGQTASMSTRKLLSPITEPVKYLEIKKNKPGTKCDSTYFVRASQVPSLVQLNDIVFPSSLSSAQSVLKPITPPSPSESPPTTPPINSRHASPYKRRSSPPRSASPRFSGSLISSLRKTNDVLSQEVSNLHNQIRSLEQRSDTKGVEIQRIQRKATEAIALAAVESSNLREVTEFIESTMDQVKEMIEKLPLEIPESKLLISVHTRATDFLQEISESETSSLPSNLESDQENTPNVPTLDSDTSKLQEHSLEENDDATGVNSCQDGKKFPEEINGSKLKSEQQDEHDTTASNSDCSNMQENKLEENVDAAGVNTCQDGRNFPEEINGSKLESEQQHDITALDSDCSKLKEQILEENVDAAKVDTSQDGRNFLEEINGSKSESEQQDAPTTPSSNSDCSKLQENRLEENVDVVGVDLCQDGGNFLKENIISKLEAKQQNAPNIPASDSGTFQLQEHRLEENVDVAEADQSSEKGHVFQECNGSSMSTAEDVVPPQNSEKYGSRSLDSLGSGRQRETQVIEKFERGVYVILVLQPDGVKNFKQVKFSKRRFTENEAEEWWKQNKGRVLRKYCPCHQNLTTGSCNITSHANQNIEASPS 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi130g00044 1105 SMART fyve_4 414 485 IPR000306 GO:0046872
Sebi130g00044 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 366 417 IPR000408 -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 1 29 - -
Sebi130g00044 1105 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 422 484 IPR017455 -
Sebi130g00044 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 131 141 IPR000408 -
Sebi130g00044 1105 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 496 IPR013083 -
Sebi130g00044 1105 Pfam Transcription factor regulating root and shoot growth via Pin3 1024 1078 IPR013591 -
Sebi130g00044 1105 FunFam PH, RCC1 and FYVE domains-containing protein 1 6 253 - -
Sebi130g00044 1105 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 680 - -
Sebi130g00044 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 93 144 IPR000408 -
Sebi130g00044 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 365 IPR000408 -
Sebi130g00044 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 251 IPR000408 -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 724 753 - -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 991 1019 - -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 582 596 - -
Sebi130g00044 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 145 199 IPR000408 -
Sebi130g00044 1105 Pfam FYVE zinc finger 418 483 IPR000306 GO:0046872
Sebi130g00044 1105 ProSiteProfiles BRX domain profile. 1024 1079 IPR013591 -
Sebi130g00044 1105 PRINTS Chromosome condensation regulator RCC1 signature 145 161 IPR000408 -
Sebi130g00044 1105 PRINTS Chromosome condensation regulator RCC1 signature 303 321 IPR000408 -
Sebi130g00044 1105 PRINTS Chromosome condensation regulator RCC1 signature 361 382 IPR000408 -
Sebi130g00044 1105 PRINTS Chromosome condensation regulator RCC1 signature 186 202 IPR000408 -
Sebi130g00044 1105 PRINTS Chromosome condensation regulator RCC1 signature 202 216 IPR000408 -
Sebi130g00044 1105 PRINTS Chromosome condensation regulator RCC1 signature 95 111 IPR000408 -
Sebi130g00044 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 92 IPR000408 -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 597 619 - -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 724 806 - -
Sebi130g00044 1105 Gene3D - 260 419 IPR009091 -
Sebi130g00044 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 92 141 IPR000408 -
Sebi130g00044 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 264 310 IPR000408 -
Sebi130g00044 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 199 248 IPR000408 -
Sebi130g00044 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 313 362 IPR000408 -
Sebi130g00044 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 367 413 IPR000408 -
Sebi130g00044 1105 Pfam Regulator of chromosome condensation (RCC1) repeat 146 195 IPR000408 -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 890 907 - -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 884 907 - -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 12 27 - -
Sebi130g00044 1105 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 313 IPR000408 -
Sebi130g00044 1105 SUPERFAMILY FYVE/PHD zinc finger 418 484 IPR011011 -
Sebi130g00044 1105 SUPERFAMILY RCC1/BLIP-II 33 419 IPR009091 -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 575 619 - -
Sebi130g00044 1105 Gene3D - 12 155 IPR009091 -
Sebi130g00044 1105 Gene3D - 156 259 IPR009091 -
Sebi130g00044 1105 MobiDBLite consensus disorder prediction 779 797 - -
Sebi130g00044 1105 Coils Coil 622 649 - -
Sebi130g00044 1105 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 238 248 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi130g00044 Sebi-Chr130 616334 626222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi130g00044 1001 1078 Major Intrinsic Protein MIP AT1G31880 32.099 1.48e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi130g00044 - - lang:109340921 1315.06