Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi130g00018 ATGGAGCAGAAAGGAAGTGTGCTTATGCAACGATATGAGCTAGGTAAATTATTAGGCCAAGGAACCTTTGCAAAGGTCTATCATGCAAGAAACCTCAAAACTGGCATGAGTGTGGCCATTAAAATTGTTGATAAAGAAAAGATTTTGAAGGTTGGGATGATTGATCAGATTAAGCGCGAAATTTCAGTGATGAGACTAATCAGGCATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCAGCAAAACCAAGATTTACTTTGTCATGGAGTATGTAAGAGGTGGTGAGCTTTTCAACAAGGTCTCAGATTTTGGGTTAAGTGCCCTTGCTGAATCTAAGCACCAAGATGGATTACTCCATACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAGGGGATATGATGGGGCCAAAGCTGATATATGGTCATGTGGGGTGATCTTATATGTTCTATTGGCTGGTTATCTTCCATTTAGAGATCCAAATCTGATGGAGATGTACAGGAAGATTGGTAAGGCAGAATTCAAATTTCCTAACTGGTTTGCTCCAGATGGGTTAGAGAAGGCCACTGTTACTGACAGCGAATACAAAGAAATTGCTCCTCTGGATGCTGATGGAGTATTTGGAGCTTGTTTTGACTTGTCCGGCTTATTCGAGGAGGCTGATCGAAAGAAAGAAGTGAGGTTTACATCTAACAAGCCTGCCTCAATTATAATCTCCAAGTTCCAAGAAATTTGTAAGCATCTTGGGCTGAAAGTGAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTGCAAAGAAGGCAGAAAAGGGCCTTTGGGTATTGATGCAGAGATTTTTGAGATCACCCCAGTCTTCCATCTGGTGGAGTTAAAGAAGTCCAGTGGAGATACATTGGAGTACCAAAAGCTTTTGAAACAGGATGTTAGGCCTGCACTTAAGGACATTGTTGGGCCTGGCAAGGAGAACAACCACAGATTTTGCAACATGAAGTAG 1014 0.4201 MEQKGSVLMQRYELGKLLGQGTFAKVYHARNLKTGMSVAIKIVDKEKILKVGMIDQIKREISVMRLIRHPHVVELYEVMASKTKIYFVMEYVRGGELFNKVSDFGLSALAESKHQDGLLHTTCGTPAYVAPEVINRRGYDGAKADIWSCGVILYVLLAGYLPFRDPNLMEMYRKIGKAEFKFPNWFAPDGLEKATVTDSEYKEIAPLDADGVFGACFDLSGLFEEADRKKEVRFTSNKPASIIISKFQEICKHLGLKVKKKDGGLFKLEGCKEGRKGPLGIDAEIFEITPVFHLVELKKSSGDTLEYQKLLKQDVRPALKDIVGPGKENNHRFCNMK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi130g00018 337 SUPERFAMILY Protein kinase-like (PK-like) 8 188 IPR011009 -
Sebi130g00018 337 Gene3D Kinase associated domain 1, KA1 212 323 - -
Sebi130g00018 337 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Sebi130g00018 337 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 100 320 - -
Sebi130g00018 337 Pfam Protein kinase domain 12 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi130g00018 337 CDD CIPK_C 217 320 - -
Sebi130g00018 337 Gene3D Transferase(Phosphotransferase) domain 1 99 200 - -
Sebi130g00018 337 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Sebi130g00018 337 Pfam NAF domain 215 260 IPR004041 GO:0007165
Sebi130g00018 337 FunFam Non-specific serine/threonine protein kinase 213 324 - -
Sebi130g00018 337 ProSiteProfiles Protein kinase domain profile. 12 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi130g00018 337 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi130g00018 Sebi-Chr130 299680 301018 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi130g00018 1 323 CBL-interacting serine-threonine protein kinases AT5G07070 49.769 1.05e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Sebi130g00018 Pkinase 5.2e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi130g00018 K07198 - gmx:100815651 534.643