Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi130g00003 ATGCACACAAAAGGAATGCAAGTTGTGTCATTTCTGCTCGTCCTACTTGTTTGGAATGCTAATGGTGATGACCAGCAAGAGGGGGGAGCATGCGGCTATGGAAACTTGCTTAGCCAAGGCTATGGCACTAACACAGCAGCATTAAGCACCGCCCTTTTCAATAATGGCCTTACTTGTGGGGCATGTTACCAGCTGCGTTGCTACAATGACACAAAGTGGTGCCTCTCTGGCACCATCACCGTTACTGCTACAAACTTTTGTCCTCCTAATAATGCTTTGTCCAATGACAATGGTGGCTGGTGCAATCCCCCACTGCAACATTTTGATTTATCAGAGCCAGCTTTCCTCCAGATTGCTCAATATCAGGCTGGAATTGTTCCCGTGCTCTTCAGAAAGGTGTCATGTGTGAAGAAAGGAGGGATGAGGTTCACCATAATTGGGCATTCATACTACAATTTGGTGTTGATAACAAACGTGGGAGGGGCAGGAGATGTGAAAGCAGTGTCAATAAAAGGATCAGGAAGTGGGTGGCAACCAATGACAAGAAACTGGGGTCAGAATTGGCAGAGCAACTCATATCTTAATGGGCAGAGTCTGTCCTTCATGATCACAACTAGTGATGGTCAAACAGTAACCAGTTACAATGTGGTGCCCCAAGGTTGGAAATTTGGACAAACCTTTGAAGGTGGTCAATTTTGA 699 0.4578 MHTKGMQVVSFLLVLLVWNANGDDQQEGGACGYGNLLSQGYGTNTAALSTALFNNGLTCGACYQLRCYNDTKWCLSGTITVTATNFCPPNNALSNDNGGWCNPPLQHFDLSEPAFLQIAQYQAGIVPVLFRKVSCVKKGGMRFTIIGHSYYNLVLITNVGGAGDVKAVSIKGSGSGWQPMTRNWGQNWQSNSYLNGQSLSFMITTSDGQTVTSYNVVPQGWKFGQTFEGGQF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi130g00003 232 SUPERFAMILY PHL pollen allergen 137 229 IPR036749 -
Sebi130g00003 232 SMART dpbb_1 45 130 IPR007112 -
Sebi130g00003 232 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 140 IPR007112 -
Sebi130g00003 232 Pfam Expansin C-terminal domain 141 218 IPR007117 -
Sebi130g00003 232 PRINTS Expansin signature 98 115 IPR002963 GO:0009664
Sebi130g00003 232 PRINTS Expansin signature 186 207 IPR002963 GO:0009664
Sebi130g00003 232 PRINTS Expansin signature 215 231 IPR002963 GO:0009664
Sebi130g00003 232 PRINTS Expansin signature 139 151 IPR002963 GO:0009664
Sebi130g00003 232 PRINTS Expansin signature 115 128 IPR002963 GO:0009664
Sebi130g00003 232 PRINTS Expansin signature 40 54 IPR002963 GO:0009664
Sebi130g00003 232 PRINTS Expansin signature 67 78 IPR002963 GO:0009664
Sebi130g00003 232 PRINTS Expansin signature 79 89 IPR002963 GO:0009664
Sebi130g00003 232 PRINTS Expansin signature 151 172 IPR002963 GO:0009664
Sebi130g00003 232 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 150 229 IPR007117 -
Sebi130g00003 232 FunFam Expansin 140 232 - -
Sebi130g00003 232 CDD DPBB_EXPA_N 28 135 - -
Sebi130g00003 232 PANTHER EXPANSIN-A15 24 232 IPR002963 GO:0009664
Sebi130g00003 232 PRINTS Expansin/Lol pI family signature 215 229 IPR007118 GO:0005576
Sebi130g00003 232 PRINTS Expansin/Lol pI family signature 123 139 IPR007118 GO:0005576
Sebi130g00003 232 PRINTS Expansin/Lol pI family signature 177 191 IPR007118 GO:0005576
Sebi130g00003 232 PRINTS Expansin/Lol pI family signature 27 45 IPR007118 GO:0005576
Sebi130g00003 232 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Sebi130g00003 232 Gene3D - 141 232 IPR036749 -
Sebi130g00003 232 Gene3D - 17 135 IPR036908 -
Sebi130g00003 232 SUPERFAMILY Barwin-like endoglucanases 25 158 IPR036908 -
Sebi130g00003 232 Pfam Lytic transglycolase 45 129 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi130g00003 Sebi-Chr130 42365 43746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi130g00003 8 232 Expansin Gene Family AT2G40610 68.724 6.38e-121 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi130g00003 - K20628 jre:109002421 389.423