Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00147 ATGTATCTAGGGTTTGGAAATGGGACGTGGAAAGATAAGATAAAGAGGATTGAGAACACAACGACAAGGCAAGTGACATTCTCGAAGAGAAGAACAGGACTAATCAAGAAGACTCATGAGCTTTCTGTGCTCTGTGATGCTCAGATCGGACTCATCATCTTCTCCACTACTGGCAAGATGTTCCAGTACTGCAGTGAACCCTTTAGGTGA 210 0.4381 MYLGFGNGTWKDKIKRIENTTTRQVTFSKRRTGLIKKTHELSVLCDAQIGLIIFSTTGKMFQYCSEPFR 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00147 69 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Sebi12g00147 69 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 65 - -
Sebi12g00147 69 CDD MADS_MEF2_like 11 69 IPR033896 GO:0000977|GO:0045944
Sebi12g00147 69 Gene3D - 19 69 IPR036879 GO:0003677|GO:0046983
Sebi12g00147 69 SUPERFAMILY SRF-like 10 67 IPR036879 GO:0003677|GO:0046983
Sebi12g00147 69 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Sebi12g00147 69 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Sebi12g00147 69 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Sebi12g00147 69 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Sebi12g00147 69 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00147 Sebi-Chr12 3141242 3141635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00147 8 69 MADS-box Gene Family AT5G23260 70.968 5.93e-26 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi12g00147 SRF-TF 2.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00147 - - pcin:129321394 112.464