Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00144 ATGGCGCATGGAGAAAAGGGAACAATTGAGTATGGAGTCAATGTTGAGGGTACTGCCTTTTCATGTGATCCAAATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTGCTGCAGTCCCCTTTGCGTTTAGTTGACAGGGAAATTCCAGGGGTAACTGATCCTATGCTTTACATTGGGATGTTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTATAGCATAAATTATCATCACACTGGTGCTAATAAAACTTGGTATGGTGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGACTGTCTTAAATCATGTGTATTGCAATAAGATTTTAGAAAAACATGGAGAGGATGGAGCCTTCAAATTTCTTGCATATAAAACAACCATGTTCCCTCCAAGTGTTTTGTTGCAACATGATGTGGCAGTTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTGATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGCAGTAAACTTTGCTATTGGAGATTGGTTTCCACCTGGGGCTGCAGCTACGAAACGATATGCACATCTCAAAATGCTACCTATAATTCCATATGAAGAACTTCTTTGTAAAGAGGCAATGTTGGTTTACAAGTCCTCAAAATTCAAGAAAGTTATCAAGCTCTTCAAATACATTAGGTTCTCAGATATGCAGCCTCTGCCATAG 723 0.4025 MAHGEKGTIEYGVNVEGTAFSCDPNDRLGTSKWNLKNFSRLLQSPLRLVDREIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHTGANKTWYGVPGYAASQFEKTVLNHVYCNKILEKHGEDGAFKFLAYKTTMFPPSVLLQHDVAVYKAVQKPGEFVITFPRAYHAGFSHAVNFAIGDWFPPGAAATKRYAHLKMLPIIPYEELLCKEAMLVYKSSKFKKVIKLFKYIRFSDMQPLP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00144 240 Pfam JmjC domain, hydroxylase 60 179 IPR003347 -
Sebi12g00144 240 ProSiteProfiles JmjC domain profile. 27 198 IPR003347 -
Sebi12g00144 240 Gene3D Cupin 1 230 - -
Sebi12g00144 240 PANTHER LYSINE-SPECIFIC DEMETHYLASE 9 214 - -
Sebi12g00144 240 SUPERFAMILY Clavaminate synthase-like 40 212 - -
Sebi12g00144 240 SMART cupin_9 27 194 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00144 Sebi-Chr12 3081749 3083218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00144 27 208 C2H2 Transcription Factor Family AT5G04240 43.617 4.46e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi12g00144 JmjC 2.8e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00144 - - gmx:100793144 417.542