Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00142 ATGAGAACAAAAGAATGGCCACATGCTCCATGTGATTGTGATGCTACTCAGTATAGACTACACATTACCAAAAGCAAATTTGTCAAAATCAAGTCCTTTAGAAAGGAGATTCCTATTGCCGGTAGGGGGATAGAGGAGAAGTTGTCAGCAAAGCGAGATAAAGGCCATGTTTTATTTGGTGGAACTATGATATTGCAGCATACTCCAGATAAGACCTTTCCTCTAAAAACACCTGATGGTGGCTGCTTGGCTGCTGTCTTGAAAACGGGATTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACCGCTAATAGCTGGGAAAGTGGATTCTTCATTTTATTCTTGGTTGTATTTGCTCTAATTGCTGCTGGTTATGTGCTTATTAAGGGACTACAAGATCCTTCAAGGAGCAAGTATAAACTTATACTGAGTTGTTCACTTATTGTTACCTCTGTGATACCAGTTGAGTTACCAATGGAATTGTCAATAGCTGTTAATAATTCTCTGATTGCACTGGCACGACGTGGAATTTTTTGCACAGAACCTTTTCGAGTACCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACAGGGACACTTACATCTGATGACATGGAGTTTTCAGGAGTTGTTTGGTTGTCAGGAACTACTGATTTGGAATCTGATATGAGTAGAGTATCTGTGCGAACATTAGAAATCCTGGCTTCTTGCCATGCATTGGTATTTGTTCAGAATAAGCTGATTGGTGATCCTCTTGAGAAGGCTGCCCTTAAGGGAATTGACTGGAGTTATAAATCTGATGAGAAGTCTGTTCCAAAAAAGGGAAATGCCCATCCTGTCCAAATTGTTCAGCGGTACCATTTTTCATCTCACTTAAAACGAATGACAGTTGTTGTACGGATTGAGGAGGAATTTTTTGCCTTTGTGAAGGGTGCACCAGAAATTATACAAGAAAGACTCACTGATATACCACCTTCATATGTTGAGACCTACAAAAAATATACACGTCAAGGATCTCGTGTTCTTGCTCTGGCATACAAGTCTCTTCCTGACATGACATCTGATAGTAGTCAGTTATTAGGTTTTGTAGGAGCAGTTATCTTATTATGTGTTAAATGCTTGAAGGTCAGTGAAGCTAGAAGCTTGGATAGGGATATAGCGGAGAGTGGACTTACTTTTGCAGGTTTTGCGGTATTTAATTGTCCCATCAGATCAGATTCAGGCACTGTATTATTTGAATTGAAAGGATCTTCGCATGATTTGGTGAGTGTGGCATTTGAATTCGGTTCTCTTGCAAACACAAGAGTGATGATTACTGGTGACCAAGCTTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATCATATCAAAACCTACATTAATCCTTTCCCCAGCAAGAAATGGTGAAGGATACAATTGGGTATCCCCTGATGAGACTGAAACCATTTGCTACAGACTGATCATAGGTATAATTGGTTTTAGTGAGAAAAAGGTTCAATCTTTGGCAGAGACTCATGATCTGTGTGTTGGAGGTGATTGCATTGAGATGTTGCAACAGTCATCAGCTCATCTTCTAGTCATTCCTCATGTGAAGGTTTTTGCTAGAGTTTCTCCTGAGCATAAAGAACTAATCATGACCACTTTCAAAACATTGGGACGGGTAACTTTGATGTGTGGGGACGGAACCAATGATGTTGGAGCTTTGAAGCAGGCCCATGTAGGAGTTGCTCTTCTGAATGTAATGCTTCCAACCCAAAGTGGAAACTCCTCTTCAGATTCATCTGGGGAAGAACGTTCAAAATCTGTCAAGCAAAAGAAATCTAGGCCTGCACTGGAAACATCTGGAAAGACAGTTAGCACAATTGGAGAAGTCACTTCAAAAGCCAAAGATGCTTCAAGATCAGATTCAACCCGCCATTCATCTGTTAACCGTGTTGAGATACAACAACAGAAGCTGAAGAAGATGATTGATGAGCTTAATGAGGAAGGAGATGGTGGTGCTCCTATTGTCAAGCTTGGTGATGCCTCAATGGCATCTCCATTCACCGCAAAGGATGCATCTGTTGTTCCAACCACTGACATAATTCGTCAAGGTCGGAGTACCTTAGTGACAACCCTCCAGATGTTTAAAATTCTTGGCCTCAATTGCCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGAGATTTACAAGCCACAATAAGGGATATGTTTACTGCTGCATTTTTCTTCTTTATATCAAATCCACGCCCTCTTCCCACTCTCTCAGCTGAACGCCCTCACCCTAACATTTTTTGTGCTTATGTCTTCCTTTCACTCTTGGGACAGTTTTCTATTCATCTGTTTTTTCTGATATCATCTGTTAGAGAAGCTGGAAAATACATGCCAGATGAATGCATTGAACCAGATTCAGATTTTCATCCCAACCTGGTAAATACAGTTTCCTACATGGTTAGCATGATTATTCAGGTGGCAACATTTGCTGTGAACTATATGGGCCATCCCTTTAACCAGAGTATTCCTGAAAACAAACCGTTCTTGTATGCCCTTGTTGCTGCTGTTGGTTTCTTCACTGTTATCACATCTGATCTCTTCAGGGACTTGAATGACTGGTTGAAGTTGGTGTCATTGCCTCCAGGTTTGAGGGATAAACTATTGATTTGGGCGTTTCTTATGTTTTCTGTATGCTATTCATGGGAGAGGTTTTTGAGGTGGACCTTCCCCGGTAATGCTAAGATCCCAGTTTGGAAGGACCCTCAACAAGTTGCTCTATGTAATTTAGAAAAGAAAAAATGGCTCTAA 2853 0.408 MRTKEWPHAPCDCDATQYRLHITKSKFVKIKSFRKEIPIAGRGIEEKLSAKRDKGHVLFGGTMILQHTPDKTFPLKTPDGGCLAAVLKTGFETSQGKLMRTILFSTERVTANSWESGFFILFLVVFALIAAGYVLIKGLQDPSRSKYKLILSCSLIVTSVIPVELPMELSIAVNNSLIALARRGIFCTEPFRVPFAGKVDICCFDKTGTLTSDDMEFSGVVWLSGTTDLESDMSRVSVRTLEILASCHALVFVQNKLIGDPLEKAALKGIDWSYKSDEKSVPKKGNAHPVQIVQRYHFSSHLKRMTVVVRIEEEFFAFVKGAPEIIQERLTDIPPSYVETYKKYTRQGSRVLALAYKSLPDMTSDSSQLLGFVGAVILLCVKCLKVSEARSLDRDIAESGLTFAGFAVFNCPIRSDSGTVLFELKGSSHDLVSVAFEFGSLANTRVMITGDQALTACHVASQVHIISKPTLILSPARNGEGYNWVSPDETETICYRLIIGIIGFSEKKVQSLAETHDLCVGGDCIEMLQQSSAHLLVIPHVKVFARVSPEHKELIMTTFKTLGRVTLMCGDGTNDVGALKQAHVGVALLNVMLPTQSGNSSSDSSGEERSKSVKQKKSRPALETSGKTVSTIGEVTSKAKDASRSDSTRHSSVNRVEIQQQKLKKMIDELNEEGDGGAPIVKLGDASMASPFTAKDASVVPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDLQATIRDMFTAAFFFFISNPRPLPTLSAERPHPNIFCAYVFLSLLGQFSIHLFFLISSVREAGKYMPDECIEPDSDFHPNLVNTVSYMVSMIIQVATFAVNYMGHPFNQSIPENKPFLYALVAAVGFFTVITSDLFRDLNDWLKLVSLPPGLRDKLLIWAFLMFSVCYSWERFLRWTFPGNAKIPVWKDPQQVALCNLEKKKWL 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00142 950 Gene3D - 440 603 IPR023214 -
Sebi12g00142 950 MobiDBLite consensus disorder prediction 596 654 - -
Sebi12g00142 950 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 209 415 IPR023299 GO:0000166
Sebi12g00142 950 PANTHER CATION-TRANSPORTING ATPASE-RELATED 38 924 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Sebi12g00142 950 Coils Coil 653 673 - -
Sebi12g00142 950 MobiDBLite consensus disorder prediction 607 621 - -
Sebi12g00142 950 MobiDBLite consensus disorder prediction 622 638 - -
Sebi12g00142 950 SFLD p-type atpase 184 711 IPR044492 -
Sebi12g00142 950 FunFam Cation-transporting ATPase 199 371 - -
Sebi12g00142 950 ProSitePatterns E1-E2 ATPases phosphorylation site. 205 211 IPR018303 -
Sebi12g00142 950 Gene3D - 23 103 - -
Sebi12g00142 950 NCBIfam HAD-IC family P-type ATPase 540 589 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi12g00142 950 NCBIfam HAD-IC family P-type ATPase 118 224 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi12g00142 950 SFLD Haloacid Dehalogenase 184 711 - -
Sebi12g00142 950 PRINTS P-type cation-transporting ATPase superfamily signature 569 588 - -
Sebi12g00142 950 PRINTS P-type cation-transporting ATPase superfamily signature 203 217 - -
Sebi12g00142 950 Pfam Cation transport ATPase (P-type) 254 332 - -
Sebi12g00142 950 Gene3D - 213 412 IPR023299 GO:0000166
Sebi12g00142 950 SUPERFAMILY HAD-like 203 588 IPR036412 -
Sebi12g00142 950 SUPERFAMILY Calcium ATPase, transmembrane domain M 110 925 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00142 Sebi-Chr12 3033402 3042586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00142 36 948 Primary Pumps ATPases AT5G23630 70.383 0.0 1283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00142 K14950 - gmx:100789385 1435.24