Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00098 ATGAGTTCCAATTCTAAACAAAACCAGCTTCCTATAGATCAAGAAACAGAGGTTGATGAAGCTTACCTCACTGCTCTGTTTCTAAGCTTCAGCAGGGTATTTCCTTCAATTCTTAATGCTGCTGTTGATCTCAATTTGTTTGAGATAATAGCTAAGGCACAAAGTTCATGTGGTGGTTCATCCGTGTCTGCCTCTGAGATTGCTTCTCAATTTCCAAACCAACACTCAGAATTGGCAAAAAGGCTTGAACGCATGTTGCCTGTGTTGGCTAGTTATTCTCTTCTAACTTGCTCCATTCGCACCAATGAAGATGGTAAAAGAGAAAGAGTTTATGCTCTCTCTCCCGTTGGTCAATACTATGTATTTGACAATGATGGAGGCTCTTTGGGTCCATTCGCAACTTTAATCCACAGAGGATTTCAACAAGTTTGGAATGATGTCAAGGATGCAATTGTTGACCCTGAGAACAATAACCATTTCCAAAATGTTCATGGATTGCTGCCTTTTCAATATATGGAGAAAGATAAAGAGCAGAATCAAATATTTAACAATGCAATGGCTCATAATGGCCCATTAGAAATGAAAATGATCCTTAAACTATATAAAGGATTTGAGGGAGTATCAACACTCGTTGATGTAGGAGGTGGAGTAGGCCGGGTACTAAAACAAATTATCTCTAAGTATCCTTCTGTAAAAGGAATTAATTTTGATTTACCTCAAGTGATTCAAGATGCATCACCTCTTCCAGTAGTGACAATGATAGGTGTCAGGTGGTGGTCATGGAGGGTGTTAGACAACAATGATAGTGGTGGAGGGTATTGTATGATGTTGGAAGGGATTGAGCATGTTGGAGGAAGCATGTTTGAAAGTGTTCCAAATGGTGATGCCATCTTACTAAAGCGTGTATGCCATAATTGGTCAGATGAAGAATGTGTGAAGTTTCTAAGAAATTGTCACAAAGCTTTGCCAAAATATGGGAAGGTGATTGTTGTGGACTGTATAGTTCCAGAAGTTCCAAACCCAAGCATTAGCTCTAAGCTTGCTTGTGATGTTGACAATGTCATGTTTTTAATACATGGAGGAAAGGAAAGGACTGAGAATGAATTTCAAAGCTTATGCATGAGCTCTGGATTTTCCAAATTTCATGTTGCTTGCAGGGGTTTCTCAGCTATATTAGGAGTGATGGAATTTTATAAATAA 1200 0.3875 MSSNSKQNQLPIDQETEVDEAYLTALFLSFSRVFPSILNAAVDLNLFEIIAKAQSSCGGSSVSASEIASQFPNQHSELAKRLERMLPVLASYSLLTCSIRTNEDGKRERVYALSPVGQYYVFDNDGGSLGPFATLIHRGFQQVWNDVKDAIVDPENNNHFQNVHGLLPFQYMEKDKEQNQIFNNAMAHNGPLEMKMILKLYKGFEGVSTLVDVGGGVGRVLKQIISKYPSVKGINFDLPQVIQDASPLPVVTMIGVRWWSWRVLDNNDSGGGYCMMLEGIEHVGGSMFESVPNGDAILLKRVCHNWSDEECVKFLRNCHKALPKYGKVIVVDCIVPEVPNPSISSKLACDVDNVMFLIHGGKERTENEFQSLCMSSGFSKFHVACRGFSAILGVMEFYK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00098 399 Gene3D - 32 157 IPR036388 -
Sebi12g00098 399 SUPERFAMILY "Winged helix" DNA-binding domain 17 124 IPR036390 -
Sebi12g00098 399 Pfam Dimerisation domain 37 90 IPR012967 GO:0046983
Sebi12g00098 399 Gene3D - 168 197 IPR036388 -
Sebi12g00098 399 PIRSF O-mtase 2 255 IPR016461 GO:0008168
Sebi12g00098 399 PIRSF O-mtase 274 399 IPR016461 GO:0008168
Sebi12g00098 399 Gene3D Vaccinia Virus protein VP39 277 386 IPR029063 -
Sebi12g00098 399 PANTHER O-METHYLTRANSFERASE 28 388 IPR016461 GO:0008168
Sebi12g00098 399 FunFam Caffeic acid 3-O-methyltransferase 2 120 - -
Sebi12g00098 399 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 135 387 IPR029063 -
Sebi12g00098 399 Pfam O-methyltransferase domain 144 246 IPR001077 GO:0008171
Sebi12g00098 399 Pfam O-methyltransferase domain 278 379 IPR001077 GO:0008171
Sebi12g00098 399 Gene3D Vaccinia Virus protein VP39 179 255 IPR029063 -
Sebi12g00098 399 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 399 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00098 Sebi-Chr12 2162981 2165382 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00098 4 388 Monolignol Biosynthesis Gene Families AT5G54160 43.814 6.63e-104 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00098 - - aprc:113869089 502.671