Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00096 ATGAGTTCCAATTCCAAACAAAACCAGCTTCCTATAGATCAAGAAACAGAGGTTGATGCAGCTTACCTCTCTGCTCTGTTTCTAAGCTTTAGCAGGGTCTTTCCTGCAATTCTAAACGCTGCTGTTGATCTCAATTTGTTTGAGATAATAGGTAAGGCACAAAGTTCATGTGGTTCTTCATCCTTGTCTGCCTCTGAAATTGCTTCTCAATTCCCAAACCAACACACGCAATTAGCAAAAAGGCTTGAACGCATGTTGCCTGTGTTGGCTAGTTATTCTCTTCTAACTTGCTCCATTCGCACCAATGAAGATGGTAAAAGAGAAAGAGTTTATGCTCTCTCTCCCGTTGGTCAATACTATTTGTGTGACAATGACGGAGAATCTTTGGGTCCATTCTCATCTTTAGTGCATCGAGGATTTGGTCAAGTTTGGAATGATGTAAAGGATGCATTCGTGGACCCTAATAGCAATAACCTTTTTCAGAAAGTTCATGAAGTGCCTCTTTTTCAATATATGGAGCAAGATCAAGAGCTTAATCATATGTTTAACAAAGCAATGGCCCAAGCCAGCCCATTAGAAGTGAAAATGATCCTTAAACAATATAAAGGATTTGAGGGATTATCAACACTGGTTGATGTAGGAGGTGGAGTAGGGTTGTCCTTAAAATTGATTATTTCTGAATATCCTTCAATAAAAGGAATTAATTTTGATTTGCCTCAAGTGATTGAAGATGCACCGCCTCATCCAGGGATTGAGCACGTTGGAGGAAGCATGTTTGAAAGTGTTCCGAATGGTGATGCCATCTTAATAAAAGTTAGTGAACCACATGAGTGA 834 0.3957 MSSNSKQNQLPIDQETEVDAAYLSALFLSFSRVFPAILNAAVDLNLFEIIGKAQSSCGSSSLSASEIASQFPNQHTQLAKRLERMLPVLASYSLLTCSIRTNEDGKRERVYALSPVGQYYLCDNDGESLGPFSSLVHRGFGQVWNDVKDAFVDPNSNNLFQKVHEVPLFQYMEQDQELNHMFNKAMAQASPLEVKMILKQYKGFEGLSTLVDVGGGVGLSLKLIISEYPSIKGINFDLPQVIEDAPPHPGIEHVGGSMFESVPNGDAILIKVSEPHE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00096 277 Gene3D Vaccinia Virus protein VP39 122 273 IPR029063 -
Sebi12g00096 277 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 277 IPR016461 GO:0008168
Sebi12g00096 277 SUPERFAMILY "Winged helix" DNA-binding domain 18 124 IPR036390 -
Sebi12g00096 277 PANTHER O-METHYLTRANSFERASE 28 271 IPR016461 GO:0008168
Sebi12g00096 277 Pfam Dimerisation domain 37 90 IPR012967 GO:0046983
Sebi12g00096 277 Pfam O-methyltransferase domain 144 271 IPR001077 GO:0008171
Sebi12g00096 277 Gene3D - 1 120 IPR036388 -
Sebi12g00096 277 FunFam Caffeic acid 3-O-methyltransferase 2 120 - -
Sebi12g00096 277 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 136 271 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00096 Sebi-Chr12 2144654 2146114 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00096 1 271 Monolignol Biosynthesis Gene Families AT5G54160 44.118 6.87e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00096 - - gmx:100793053 357.451