Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00090 ATGAGCAATAACTCATCAGATCCCCAAATTTCCCTTTTCTTGCAGACTGGTGGTGCTCCTGAACTGTCACCTCCACAAAACGGTACCGTTTTCTTTGGTGTTCGTCATTTCCTTTATCAGTGTGGCAAGAGGGAGGGTGAGGATGGAGATGAGAAGCAGGTGAGTGCAAAGAAACAGAAGAGAGGTGAGGTTGCTGAGGAGCATGAGAATAAGGAGGAAATTAATTCAGATTATTCTGAACAAGATAAGAAACTTGAAGTTAAAATAGCGAATCTCCTATCCATTGTGGTTCTCAAGAATCAACAGATGATGGTGGCTCAGAGTCTGGTTCTGACAGAAGCTCTGATGAGGACAATGGGGAGATGGATATTGATGAGGGTGATAGTTCTGAAGAAAGTAATGAAGAGGAACAAAAGAAAAAGATGGAAGTTTTGGCATTGTCTGAAAGAGAAAAATCCTGGAATTTTGCAGCCTAAAACCCCAGCTAGTCTGAAAGAGAAAAATCCTGCATCAAGGACAATATATGTTAGAAACTTGTCATACAGTGTGGAACAGGCTGAAATGGAAAAACTTTTCAAAGATTGTGGAGAAGTTCTTGATATTCATCTCCATACAGATCGTGAAGGGAGGTTTAGAGGCTTTGGACACGTCAAGTTTTCAACGGCAGAAGCAGCAGAAAAAGCTCTTGAGTTGAATAATACAGAATTGTTGAAACGTCCCATCAAAGTTTGTATAGCTCGGGATACCCACAATAGAAGCAACTCAAGCAACTCATTGCATGATGCTGAAAGATTACAGTCTCAAACTGTATATCCTAAAACCACAGCTTACCCAAAAGAAAATAGCGCTGCATCAAAATCAAAGACAATATGTGTTAGAAACTTGTCATACAGTGTGGAACGGGCTGATATGGAAAATCTTTTCAAAGATTGTGGAGAAATCGTTGATGTTCGTCTCCATACAGATAGCGAAGGGAGGTTTAAAGGCTTTGGACATGTCGAGTTTGCAATAGCAGAAGCAGCACAAAAAGCTCTTCAGTTGGATAATACGGAATTGTTGAAATGTCGCATCAAAGTTTTTATAGCTCAAGAAAAGGGAGAATATACCCGCAAGAGGAGTCTTAGCAACCCGAGCAACTCATTCCATGAGGCATCCCGTGTGGAAGAGAAGCCTAAATCCCCAGCTACGCGAATAGAAAACAATGCTGCATCAAAGACAATATATGTTAGAAACTTGTCATACAGTGTGAAACAAGCTGATATGGAAAATCTGTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTTCATAAAGATCGTGATGGGAGGTTCAAAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAAAGCTCTTGAGTTGGATAATACACTATTGTTGAAACGTCCCATCAATGTTCTTATAGCTCAAGAAAAGGGTGATTGTACCCGCAACAGAAGTTTTAGCAACTCGAGCAACTCATTCCGTGAGGCATCCGTTGCAGAAGAGAAGGACATGGAGATGTTTGATTCTGCTTCCATTGATAAGAAAGGTCCTAAATCCCCAGCTACGCGAAAAGAAAAAATTGCTGCATCAAAGACGATACGAGTTAGAAACTTATCATACAGTGTGGAACAGGCTGATATGGAAAATTTCTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTCCATACAAATCATGAAGGTTGGTTTGATGGCTTTGGACATGTTGAGTTTGCAACAGTAGAAGCAGCGCAAAAAGAGGTGCATGACTATGCAATGGAAAATGAGAAGTGCCTCCTTATCAGTTTGGCTCTTGAGTTGGATAATACACAATTCTTGAAACGTTTCATCAGGGTTGATATAGCTCGGGAAAAGGGTGAATATATCCCCAATAGAAGCAACTTGAGCAACTTATTCCAGAAGGGTGAAAGATTTCAGTCTCATACTGTATCCATGAATAATTTTGATACATCCCTTGTGGAAGAGAAGCCTGTGAAAGATTTAGGGAGTTCAGGGGACGGTGGGGAAGAAATTAAGGAAAAAGCCTCCAAATCTTCTCTGGAAAGTCCTGAAACTCCAGCCAGTCTAAAAGAGAAAAATGCTGCATCAAAGACAATATGTGTTAGAAACTTGTCATATAGAGTGGAACGAGCTGATATGGAAAATCTTTTCAAACATTGTGGAGAAGTTGTTGATGTTCGTCTGCAAAGAGATAGTGAAGGGAGGTTGAGAGGCTTTGGACATGTTGAGTTTGCAACAGCAGAAGCAGCACAAAAAGCTCTTGAGTTGGATAATACAGAGTTGTTGAAACGGCCCATCAGAATTGGTATTGCTCGGGAAAAGGTTGAATATACTCTCAATATAAGCAACTTGAGCAACTCAAACATTAAGAGTGAAAGATTTCAGTTTCAAACTGTATTTGTGAAGGGTTTTGATACATCCCTTGCAGAAGATAAGTTAAAAGCTAGCCTGGAAGAGCATTTCAGTTCTTGTGGAGAGATTGCATGGATATCGATTCCGAAATTTCGTGATTCTGGTGCTTTTAAGGGGTTTGCTCACTTATACTTCAAAGGTGTTGATAGCTTGAAGAAAGCTCTACAACTAGATCAAACTGAGCTTGGAGGTTATCCCTTGTTAGTTGAAAAAGCAAAGCCTCGACGTGACAATCAAGGTATATATGATGGCAGAGGTGGTGGTGGTTATCAGTTTGGTGTAAGGGATGGAGGTGGCCATGGTGGTGGAGTGGGTTGGGGGAGAAGTGGATGCAGTGGTAGGCATTGA 2796 0.4077 MSNNSSDPQISLFLQTGGAPELSPPQNGTVFFGVRHFLYQCGKREGEDGDEKQVSAKKQKRGEVAEEHENKEEINSDYSEQDKKLEVKIANLLSIVVLKNQQMMVAQSLVLTEALMRTMGRWILMRVIVLKKVMKRNKRKRWKFWHCLKEKNPGILQPKTPASLKEKNPASRTIYVRNLSYSVEQAEMEKLFKDCGEVLDIHLHTDREGRFRGFGHVKFSTAEAAEKALELNNTELLKRPIKVCIARDTHNRSNSSNSLHDAERLQSQTVYPKTTAYPKENSAASKSKTICVRNLSYSVERADMENLFKDCGEIVDVRLHTDSEGRFKGFGHVEFAIAEAAQKALQLDNTELLKCRIKVFIAQEKGEYTRKRSLSNPSNSFHEASRVEEKPKSPATRIENNAASKTIYVRNLSYSVKQADMENLFKDCGEIVDVRLHKDRDGRFKGFGHVEFATAEAAQKALELDNTLLLKRPINVLIAQEKGDCTRNRSFSNSSNSFREASVAEEKDMEMFDSASIDKKGPKSPATRKEKIAASKTIRVRNLSYSVEQADMENFFKDCGEIVDIRLHTNHEGWFDGFGHVEFATVEAAQKEVHDYAMENEKCLLISLALELDNTQFLKRFIRVDIAREKGEYIPNRSNLSNLFQKGERFQSHTVSMNNFDTSLVEEKPVKDLGSSGDGGEEIKEKASKSSLESPETPASLKEKNAASKTICVRNLSYRVERADMENLFKHCGEVVDVRLQRDSEGRLRGFGHVEFATAEAAQKALELDNTELLKRPIRIGIAREKVEYTLNISNLSNSNIKSERFQFQTVFVKGFDTSLAEDKLKASLEEHFSSCGEIAWISIPKFRDSGAFKGFAHLYFKGVDSLKKALQLDQTELGGYPLLVEKAKPRRDNQGIYDGRGGGGYQFGVRDGGGHGGGVGWGRSGCSGRH 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00090 931 MobiDBLite consensus disorder prediction 45 76 - -
Sebi12g00090 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 809 890 IPR000504 GO:0003723
Sebi12g00090 931 MobiDBLite consensus disorder prediction 668 691 - -
Sebi12g00090 931 Gene3D - 134 245 IPR012677 -
Sebi12g00090 931 MobiDBLite consensus disorder prediction 1 27 - -
Sebi12g00090 931 SUPERFAMILY RNA-binding domain, RBD 806 919 IPR035979 GO:0003676
Sebi12g00090 931 SUPERFAMILY RNA-binding domain, RBD 403 493 IPR035979 GO:0003676
Sebi12g00090 931 SUPERFAMILY RNA-binding domain, RBD 161 257 IPR035979 GO:0003676
Sebi12g00090 931 Gene3D - 247 371 IPR012677 -
Sebi12g00090 931 Gene3D - 487 635 IPR012677 -
Sebi12g00090 931 Gene3D - 372 486 IPR012677 -
Sebi12g00090 931 Gene3D - 659 790 IPR012677 -
Sebi12g00090 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 536 629 IPR000504 GO:0003723
Sebi12g00090 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 709 785 IPR000504 GO:0003723
Sebi12g00090 931 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 279 387 - -
Sebi12g00090 931 Gene3D - 794 927 IPR012677 -
Sebi12g00090 931 SUPERFAMILY RNA-binding domain, RBD 702 788 IPR035979 GO:0003676
Sebi12g00090 931 SUPERFAMILY RNA-binding domain, RBD 529 642 IPR035979 GO:0003676
Sebi12g00090 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 711 779 IPR000504 GO:0003723
Sebi12g00090 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 358 IPR000504 GO:0003723
Sebi12g00090 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 820 883 IPR000504 GO:0003723
Sebi12g00090 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 474 IPR000504 GO:0003723
Sebi12g00090 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 242 IPR000504 GO:0003723
Sebi12g00090 931 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 538 591 IPR000504 GO:0003723
Sebi12g00090 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 364 IPR000504 GO:0003723
Sebi12g00090 931 SUPERFAMILY RNA-binding domain, RBD 282 376 IPR035979 GO:0003676
Sebi12g00090 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 481 IPR000504 GO:0003723
Sebi12g00090 931 SMART rrm1_1 173 244 IPR000504 GO:0003723
Sebi12g00090 931 SMART rrm1_1 710 781 IPR000504 GO:0003723
Sebi12g00090 931 SMART rrm1_1 406 477 IPR000504 GO:0003723
Sebi12g00090 931 SMART rrm1_1 810 886 IPR000504 GO:0003723
Sebi12g00090 931 SMART rrm1_1 537 607 IPR000504 GO:0003723
Sebi12g00090 931 SMART rrm1_1 289 360 IPR000504 GO:0003723
Sebi12g00090 931 MobiDBLite consensus disorder prediction 668 704 - -
Sebi12g00090 931 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 248 IPR000504 GO:0003723
Sebi12g00090 931 MobiDBLite consensus disorder prediction 371 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00090 Sebi-Chr12 1985577 2009987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00090 711 893 Eukaryotic Initiation Factors Gene Family AT4G34110 28.191 3.72e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00090 - - aprc:113868402 793.497