Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00089 ATGTCTAACTTGGTTCAACTTCCCTCCAACCTTTTGCCATCTGATGCAAGCCCTGATTGGATGAACAAAGCTGACAATGCATGGCAACTCACAGCTGCTACACTTGTTGGCCTTCAAAGTGTTCCTGGTCTCATAATTTTGTATGGTGGAGCTGTTAAGAAGAAATGGGCAGTGAACTCAGCATTCATGTCACTCTATGCTTTTGCTTGTGTTTTTTTCTGTTGGGTTATTTGGGGTTATAGGATGTCTTTTGGTGATAAGCTTTTTCCTTTCTGGGGAAAACCTGCTGTTGCATTAGATCAGGGTTATCTTTTCAAGCCAGCTTTTTTGGGGGCTTTCCCAAATGCCACAATGGTGTATTTCCAATGTGTCTTTGCTGCCATCACTTTGATTTTGATAGCAGGGGCTCTGTTGGGTCGCATGAACTTTTATGCTTGGATGTTGTTTGTACCTTTATGGCTTACCTTCTCCTACACCTTCACAGCATTTAGCATATGGAGTACCAATGGATTTCTATCCAAAATGGGCATAATCGATTATTCAGGTGGTTATGTCATCCATTTGTCTTCTGGGGTTGCTGGATTCACAGCTGCATATTGGGTTGGACCACGCCTAAACAAGGATAGGGAAAGGTTCCCTCCAAACAACATACTTCTAATGCTAGCTGGAGCAGGGCTGCTATGGATGGGGTGGACAGGGTTCAATGGAGGAGACCCTTACACAGTGAGCATGGATGCTTCCGTGGCTGTCTTGAACACTCATGCTTGCACTGCTACCAGCTTGCTTACTTGGGTCATCCTTGATGTCATATTTTTCCGAAAGCCTTCTGTAATTGGAGCAGTTCAAGGCATGATTACTGGTTTGGTTTGCATAACCCCAGCTGCAGGGGTTGTGCAAGGATGGGCAGCACTTATAATGGGAGTTTTCTCTGGCTCAATTCCTTGGTTCACTATGATGGTAATCCACAAGAGATCAAAGCTGCTACAGAAGGTGGATGATACAATGGCAGTGTTGCACACACATGCCATTGCAGGAAGCCTTGGAGGAATCCTCACAGGGCTCTTTGCTGAGCCAAGATTGAACTACTTGTTCTATGGCAATTATAATAAATACGTTGGTCTATTTTATGGCTTCCAATCGAACTTGGTCAAAAATGGGATCAGGCAAATACTAATCCAACTTCTTGGGATTTTGTTTGTTGTCTTTGTTAATGTCATAAGCACAAGTTTGATATGCCTCTTGATTCGATTTGTGGTTCCTTTAAGAATGTCTGAAGAGGATATGGAAATAGGTGATGAAGCTGCTCATGGAGAAGAAGCTTATGCCATCTGGGGTCAGGGTGATAAGCTTGAAAATTCAAGTTCAAAAAAATAA 1374 0.4309 MSNLVQLPSNLLPSDASPDWMNKADNAWQLTAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFFCWVIWGYRMSFGDKLFPFWGKPAVALDQGYLFKPAFLGAFPNATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSTNGFLSKMGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSMDASVAVLNTHACTATSLLTWVILDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGVFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPRLNYLFYGNYNKYVGLFYGFQSNLVKNGIRQILIQLLGILFVVFVNVISTSLICLLIRFVVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKK 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00089 457 FunFam Ammonium transporter 10 444 - -
Sebi12g00089 457 ProSitePatterns Ammonium transporters signature. 179 204 IPR018047 GO:0008519|GO:0016020|GO:0072488
Sebi12g00089 457 PANTHER AMMONIUM TRANSPORTER MEP2 9 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Sebi12g00089 457 PRINTS Rhesus blood group protein signature 249 271 IPR002229 GO:0005886
Sebi12g00089 457 PRINTS Rhesus blood group protein signature 218 236 IPR002229 GO:0005886
Sebi12g00089 457 PRINTS Rhesus blood group protein signature 122 138 IPR002229 GO:0005886
Sebi12g00089 457 SUPERFAMILY Ammonium transporter 20 423 - -
Sebi12g00089 457 Pfam Ammonium Transporter Family 27 441 IPR024041 GO:0008519|GO:0016020|GO:0072488
Sebi12g00089 457 Gene3D Ammonium transporter AmtB like domains 10 445 IPR029020 -
Sebi12g00089 457 NCBIfam ammonium transporter 25 441 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00089 Sebi-Chr12 1974010 1976822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00089 116 453 Inorganic Solute Cotransporters AT2G38290 64.497 5.65e-145 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00089 K03320 - gmx:100787856 807.749