Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00085 ATGATGAGGAGATACCAGAGGAGGAAGTTGAATTTGGAGTTGGACCTGAACCAAACTCCGCCACTGGAGGAACCTTCTGCTCCACAACAGCAGCATCAGCAACAGCTAATTATGATTGACGTGGAGGCCATTGATGATGATGTTATTGAATCCTCACCCAGGGCTTTTGCTCAGGCTAAGACCAATGCGAGGAGGAATCGGAGGAGGACTATAGTTGACGTGGATTCGGAAAATCAGACCAGGGCAACTAATAATGATCACAGTGGATGCAGAAGAGATCGCTCAATCCAACGAATTATTAACAGTGATCTTTATATCAATTTGGAAGGCAGTAGCAGTTCTTTGAATGAGAATGCTAGAAAATCACCTGAACGTCCTGAACCTCCAAAGGAGCCTGTCTTTAACTGCCCAATATGTATGGCTCCTTTGACAGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAGGAAGTGCATTAGAACTGCTATAAATGCACAGGGTAAATGCCCTACTTGTAGGAAAAAGGTTACTATGAGAGAGCTGATAAGGGTGTTTCTTCCATCAGCTAGTTGA 576 0.4358 MMRRYQRRKLNLELDLNQTPPLEEPSAPQQQHQQQLIMIDVEAIDDDVIESSPRAFAQAKTNARRNRRRTIVDVDSENQTRATNNDHSGCRRDRSIQRIINSDLYINLEGSSSSLNENARKSPERPEPPKEPVFNCPICMAPLTEEMSTRCGHIFCRKCIRTAINAQGKCPTCRKKVTMRELIRVFLPSAS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00085 191 ProSiteProfiles Zinc finger RING-type profile. 136 174 IPR001841 -
Sebi12g00085 191 MobiDBLite consensus disorder prediction 1 31 - -
Sebi12g00085 191 PANTHER ELFLESS, ISOFORM B 3 189 - -
Sebi12g00085 191 Pfam Zinc finger, C3HC4 type (RING finger) 135 173 - -
Sebi12g00085 191 SUPERFAMILY RING/U-box 135 180 - -
Sebi12g00085 191 ProSitePatterns Zinc finger RING-type signature. 151 160 IPR017907 -
Sebi12g00085 191 SMART ring_2 136 173 IPR001841 -
Sebi12g00085 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 189 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00085 Sebi-Chr12 1921391 1923970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00085 4 189 C3H Transcription Factor Family AT5G48655 48.469 3.99e-45 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00085 K22651 - qsa:O6P43_016885 213.001