Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00074 ATGACTAGCAAGAAGCATTCTGTTCCCTCTGTGATCCGTTTCTTTAAGATCATCACAACAACATGTCTTGAAGCTCAAAAGCTTAAGATTCCAAACAATTTCACTAGGAAATATGGTGGTGACATGTCAAACCCAATGTTTCTCAAGCCTCCAGATGGCACTGAATGGGAAATATATTTGACTAAAAATGATGGTGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCCCTTGATTACGGGCATATGGTGTTGTTTGAATACAAGGGTACTTCTCATTTTGAGGTGCATATATTTGACAAGACTACCCTTGAAATACAATATCCTTTCCATGGCAACCAAGATGAACAGGACAAGATTAGTGACAACTCTGTTGAAATTTTGGAAGAACTATCTCCATCTTCATGCAACAAGAGGAAGACTAAACTGAAATCACCAATGCCATGTCCTCAACCATGTCAGAAATTTAGAACTGGCACAAGTGGAGGTGTTGGAAGTAGCCCCAAATTGCAAAATTTACCTGAACATGTCTATATAAAAGATGAAGTGGGTGGTACCACTACTACCACTGAAAGCCAAAAAGTGGAGCAGTTAAATCTTAAAATTACTGAAGCTATAAACAGAGCCAGAGTCACAACCTTCGGATCTAAAAATCCTTCTTTCATTGTTGTCATGAAACCTTCCTATATTCGACATGGATTGCATGTCCCATTACAATTTGGAGAAAAATATTTGAAGAAAAAAAGAAAATTGGATATCCTCCTTCAGGTGTTGGATGGGAGAACTTGGCCATTTTTAATCTTTCAAGTTGGGGAAGAACCACATTACCCTCCACCACAAGGTGACAAGGCAGATGGAGCTATGAAAGAAGCTAATAAATTCACCTCTGAGAATCCCTTTTTCACAGTCAATATAAAGCCTTTTTCTGGGAGGGTACACAGACCGTGTGTACCAAGAACCTTTGTCAATAATAAGAAGACCTTCATGTTACAATTTGAAAAGAAGTTGTGGCCTGTAAAGAGGCCACAGTTAGGCAATCCATTTGGAGCTGTTGGTACCATAATTCTATGA 1083 0.3841 MTSKKHSVPSVIRFFKIITTTCLEAQKLKIPNNFTRKYGGDMSNPMFLKPPDGTEWEIYLTKNDGDIWFQKGWKEFATYYSLDYGHMVLFEYKGTSHFEVHIFDKTTLEIQYPFHGNQDEQDKISDNSVEILEELSPSSCNKRKTKLKSPMPCPQPCQKFRTGTSGGVGSSPKLQNLPEHVYIKDEVGGTTTTTESQKVEQLNLKITEAINRARVTTFGSKNPSFIVVMKPSYIRHGLHVPLQFGEKYLKKKRKLDILLQVLDGRTWPFLIFQVGEEPHYPPPQGDKADGAMKEANKFTSENPFFTVNIKPFSGRVHRPCVPRTFVNNKKTFMLQFEKKLWPVKRPQLGNPFGAVGTIIL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00074 360 Gene3D - 205 278 IPR015300 -
Sebi12g00074 360 SUPERFAMILY DNA-binding pseudobarrel domain 9 105 IPR015300 -
Sebi12g00074 360 CDD B3_DNA 223 269 IPR003340 GO:0003677
Sebi12g00074 360 Gene3D - 9 107 IPR015300 -
Sebi12g00074 360 Pfam B3 DNA binding domain 14 105 IPR003340 GO:0003677
Sebi12g00074 360 PANTHER B3 DOMAIN-CONTAINING 5 292 - -
Sebi12g00074 360 SMART B3_2 14 106 IPR003340 GO:0003677
Sebi12g00074 360 CDD B3_DNA 13 104 IPR003340 GO:0003677
Sebi12g00074 360 SUPERFAMILY DNA-binding pseudobarrel domain 218 272 IPR015300 -
Sebi12g00074 360 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00074 Sebi-Chr12 1676376 1678800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00074 14 249 B3 DNA Binding Superfamily AT3G18990 28.261 3.33e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi12g00074 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00074 - - lja:Lj5g3v0508090.1 359.377