Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00073 ATGTCAAATCCAATATTTCTCAAGCCTCCAGATGGCACTGAATGGAAAGTGTATTGCAGTAAAGTGGATGGTGATATTTGGCTTCAAGAGGGTTGGAAAGAGTTTTCTACTCATTACTCCCTTGATTACGGGCATATGGTGTTGTTTAAATACAAGGGTACTTGTCATTTTGAGGTGCATATATTTGACAAGACTACCCTTGAAATACAATATCCTTTCCATGCCAATCAAGATGAACAAGACAACATTGACCAGATTAGTGATGACTCAGTTGAAATTTTGGATAATCTACCTCCATCTACATGCAAGAAAACTACCTTCAAGTCATGTCCTCAACCACGTAAGAAATTAAGGACTGCCACAAGTGAAGGTGTTGGAAGTAGCCCCAAATTACAAAATTCACCTGAACATGCCAATATAAAAGAGGATGTGAGTGGTACCACTCAATGCCAAAAAGTGGAGCAGTTAAATTCTAAAATTATTAGAGCTTTAAACAGAGCTGAAACATTCAGATCTAAAAATCCCTCTTTCATTGTTGTCATGAAACCTTCCTATGTTGATCGTGGAATCTTGGTCTTGGATGGGAGAACTTGGCATGGTAGATATATTTTCAGAAAAGCTGGTAAATATAGTAACGTCCAAATAACTTCTGGATGGAAGAAATTTGCATCAGATAATAATTTGAAAGAGGGGGATGCTTGTCTTTTTGAGTTGACCAAAAGCCAACAGCTTTCTTTGAAAGTTCTAATCTTTCGAGTTGGGGAAGAACAACATTCCCCTCCACCATAA 789 0.3777 MSNPIFLKPPDGTEWKVYCSKVDGDIWLQEGWKEFSTHYSLDYGHMVLFKYKGTCHFEVHIFDKTTLEIQYPFHANQDEQDNIDQISDDSVEILDNLPPSTCKKTTFKSCPQPRKKLRTATSEGVGSSPKLQNSPEHANIKEDVSGTTQCQKVEQLNSKIIRALNRAETFRSKNPSFIVVMKPSYVDRGILVLDGRTWHGRYIFRKAGKYSNVQITSGWKKFASDNNLKEGDACLFELTKSQQLSLKVLIFRVGEEQHSPPP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00073 262 SUPERFAMILY DNA-binding pseudobarrel domain 172 255 IPR015300 -
Sebi12g00073 262 MobiDBLite consensus disorder prediction 113 146 - -
Sebi12g00073 262 Coils Coil 153 173 - -
Sebi12g00073 262 Gene3D - 188 255 IPR015300 -
Sebi12g00073 262 Gene3D - 1 66 IPR015300 -
Sebi12g00073 262 Pfam B3 DNA binding domain 5 64 IPR003340 GO:0003677
Sebi12g00073 262 Pfam B3 DNA binding domain 192 252 IPR003340 GO:0003677
Sebi12g00073 262 ProSiteProfiles B3 DNA-binding domain profile. 195 254 IPR003340 GO:0003677
Sebi12g00073 262 SMART B3_2 177 254 IPR003340 GO:0003677
Sebi12g00073 262 SMART B3_2 6 65 IPR003340 GO:0003677
Sebi12g00073 262 SUPERFAMILY DNA-binding pseudobarrel domain 3 72 IPR015300 -
Sebi12g00073 262 MobiDBLite consensus disorder prediction 121 146 - -
Sebi12g00073 262 PANTHER B3 DOMAIN-CONTAINING 1 242 - -
Sebi12g00073 262 ProSiteProfiles B3 DNA-binding domain profile. 1 65 IPR003340 GO:0003677
Sebi12g00073 262 CDD B3_DNA 175 252 IPR003340 GO:0003677
Sebi12g00073 262 CDD B3_DNA 2 63 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00073 Sebi-Chr12 1668134 1669230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00073 1 255 B3 DNA Binding Superfamily AT3G18990 29.299 1.37e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi12g00073 B3 4.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00073 - - lja:Lj5g3v0508090.1 320.472