Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00072 ATGCATTCTCACAGAATGTTGAAAGTTCTGTATATGCAGAAGATTCCAAACAATTTCACTAGGAAATATGGTGGTGATATGTCAAACCCAATACTTCTCAAGCCTCCAGATGGCACCGAATGGAAAATGAATTGGACTAAACATGATGGTGATATTTGGCTTCAAGAGGGTTGGAAAGAATTTGCTACACATTACTCCCTGGATTACGGGCATATGGTGTTGTTTGAATACAAGGATACTTCTCATTTTGAGGTGCATATATTTGACAAGACTACCCTTGAAATACAATATCCTTTCCATGCCAGCCAAGATGAACAGGACAACATTGACCAGATTAGTGATGAATCAGTTGAAATTTTGGATAATCAACCTCCATCTACATGCAAGAAGACTACCTCCAAGTCATGTCCTCAACCACGTAGGAAATTGAGAACTGGCACAAGTGGAGGTGTTGGAAGTAGCCCCAAATTACAAAATTCACCTGAACATGCCAATATAAAAGAGGATGTGAGTCGTACCACTCAATGCCAAAAAGTGGACCAGTTAAATTCTAAAATTTATGAAGCTTTAAACAGAGCTGAAGCCTTCAGATCTAAATATCCCTCTTTCATTGTTGTCATGAAACCTTCCTATGTTGGTCGTGGAAACTTGGTCTTGGATGGGAGAACTTGGCATGGTAGATATATTTTCAGAAAAGTTGGTAGATATAGTAATGTCCAAGTTACTTCTGGATGGAAGAAATTTGCATCAGATAATAATTTGAAAGAGGGGGATGTTTGTCTTTTTGAGTTGACCAAAAGCCGACCCCTTTCTTTCAAAGTTTTAATCTTTCGAGTTGGGGAAGAACCACATTCCCTTCCCCCACAAGAATCAGTTGAAGAACCACATTCCCCTTCACCACAAGGTGAGGCAACTCAGCGAACTTCACTGCACCCCATCACAGGTGGAGCTCTGAAAGAAGCTAATAAATTCACCTCAGAGAATCCCTTTTTCAAAGTCTATATAAAGCCAAGTTCTACTAAGATATACAGACCGCGTGTACCAGTTACCTTTCTTAATAAAAAGAAGAAGACCTTGATGTTACAAATTGGAAAGAAATTGTGGCCTGTAAGGGTGCTCCGTTATCCATATGAAGGTTCAAGCAAGTTGTCTGGAGGTTGGACCCGATTTGCCAGAGAAAATAAATTGTTAGATGGAGATGTTTGTGTCTTTGAGCTCATCAACAACAGGAAAGATGCTGTGTTTCATGTTCATATTTTCAGAGGACACTGTTAG 1275 0.3961 MHSHRMLKVLYMQKIPNNFTRKYGGDMSNPILLKPPDGTEWKMNWTKHDGDIWLQEGWKEFATHYSLDYGHMVLFEYKDTSHFEVHIFDKTTLEIQYPFHASQDEQDNIDQISDESVEILDNQPPSTCKKTTSKSCPQPRRKLRTGTSGGVGSSPKLQNSPEHANIKEDVSRTTQCQKVDQLNSKIYEALNRAEAFRSKYPSFIVVMKPSYVGRGNLVLDGRTWHGRYIFRKVGRYSNVQVTSGWKKFASDNNLKEGDVCLFELTKSRPLSFKVLIFRVGEEPHSLPPQESVEEPHSPSPQGEATQRTSLHPITGGALKEANKFTSENPFFKVYIKPSSTKIYRPRVPVTFLNKKKKTLMLQIGKKLWPVRVLRYPYEGSSKLSGGWTRFARENKLLDGDVCVFELINNRKDAVFHVHIFRGHC 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00072 424 MobiDBLite consensus disorder prediction 120 172 - -
Sebi12g00072 424 SUPERFAMILY DNA-binding pseudobarrel domain 324 422 IPR015300 -
Sebi12g00072 424 CDD B3_DNA 330 421 IPR003340 GO:0003677
Sebi12g00072 424 ProSiteProfiles B3 DNA-binding domain profile. 221 280 IPR003340 GO:0003677
Sebi12g00072 424 Gene3D - 314 423 IPR015300 -
Sebi12g00072 424 Gene3D - 183 281 IPR015300 -
Sebi12g00072 424 Pfam B3 DNA binding domain 219 278 IPR003340 GO:0003677
Sebi12g00072 424 Pfam B3 DNA binding domain 330 422 IPR003340 GO:0003677
Sebi12g00072 424 Pfam B3 DNA binding domain 14 90 IPR003340 GO:0003677
Sebi12g00072 424 CDD B3_DNA 201 278 IPR003340 GO:0003677
Sebi12g00072 424 ProSiteProfiles B3 DNA-binding domain profile. 330 423 IPR003340 GO:0003677
Sebi12g00072 424 MobiDBLite consensus disorder prediction 120 161 - -
Sebi12g00072 424 SUPERFAMILY DNA-binding pseudobarrel domain 196 279 IPR015300 -
Sebi12g00072 424 SMART B3_2 330 423 IPR003340 GO:0003677
Sebi12g00072 424 SMART B3_2 203 280 IPR003340 GO:0003677
Sebi12g00072 424 SMART B3_2 6 91 IPR003340 GO:0003677
Sebi12g00072 424 Gene3D - 2 92 IPR015300 -
Sebi12g00072 424 MobiDBLite consensus disorder prediction 284 308 - -
Sebi12g00072 424 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 319 422 IPR044837 -
Sebi12g00072 424 SUPERFAMILY DNA-binding pseudobarrel domain 11 90 IPR015300 -
Sebi12g00072 424 ProSiteProfiles B3 DNA-binding domain profile. 1 91 IPR003340 GO:0003677
Sebi12g00072 424 CDD B3_DNA 15 89 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00072 Sebi-Chr12 1640938 1643068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00072 281 421 B3 DNA Binding Superfamily AT3G18990 35.374 1.14e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi12g00072 B3 1.6e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00072 - - lja:Lj5g3v0508090.1 445.277