Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00071 ATGTCTTCTCAAACACAAAGACGTAATCATAAGGTCTATTTTTTCAAGGTTATTGTTGAAAGTGCCCTTCGTGATGGAGAGCTGATGATTCCAAGGAGTTTTGTGAAGAGATATGGGAAAGAATTATCAAGCCCAGTAACCCTTATGCTCCCAAATAGTCCTAAATGGAAAGTTTCATTGATAAAACGTGACCATGATATTCTGTTTCAGAAAGGATCTAGAAGAAGAGGTTCGTTTAGAGGTAGGAATTGCTCAAGAAGTGAAGCTATTGAAAGAAAGAATGAGGCAGTACTAAAAGCAGCCAAAGAGAGGGCTTTAGAAAGAGCTAGAGATTTTCACTCTGAGAATCCCTTTTTCATTCGTCCATTGTGCGCTTCTTACATTCAAAATACTGTGGTTATACCAACAGGGTTTTCCAGAGAATATTTGGATGGGTACAATGGGAATGTAAGCATTGCGGTTGATGAGGACATGCCTTTGTCTGTGAAGTTCAAATTCAATGCTAACAATAACAGATCTTTTATGACCACCGGTTGGACGCAATTTTCCCAGAAATATAATTTACAAGAGGGTGACGTTTGTGTATTTGAGATGATTGACTGCACAAAATTTATGTTCAAAGTCATTATTTACCGAGCCAGAGAACAACCAAACTCTGACCAGCTTCAAGGTTAA 675 0.3822 MSSQTQRRNHKVYFFKVIVESALRDGELMIPRSFVKRYGKELSSPVTLMLPNSPKWKVSLIKRDHDILFQKGSRRRGSFRGRNCSRSEAIERKNEAVLKAAKERALERARDFHSENPFFIRPLCASYIQNTVVIPTGFSREYLDGYNGNVSIAVDEDMPLSVKFKFNANNNRSFMTTGWTQFSQKYNLQEGDVCVFEMIDCTKFMFKVIIYRAREQPNSDQLQG 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00071 224 Gene3D - 5 76 IPR015300 -
Sebi12g00071 224 SUPERFAMILY DNA-binding pseudobarrel domain 112 213 IPR015300 -
Sebi12g00071 224 Gene3D - 96 216 IPR015300 -
Sebi12g00071 224 SMART B3_2 119 214 IPR003340 GO:0003677
Sebi12g00071 224 SMART B3_2 14 87 IPR003340 GO:0003677
Sebi12g00071 224 SUPERFAMILY DNA-binding pseudobarrel domain 11 72 IPR015300 -
Sebi12g00071 224 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 28 217 IPR044837 -
Sebi12g00071 224 CDD B3_DNA 117 212 IPR003340 GO:0003677
Sebi12g00071 224 ProSiteProfiles B3 DNA-binding domain profile. 117 214 IPR003340 GO:0003677
Sebi12g00071 224 Pfam B3 DNA binding domain 130 212 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00071 Sebi-Chr12 1596561 1599329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00071 13 72 B3 DNA Binding Superfamily AT3G18990 38.333 1.11e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi12g00071 B3 2.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00071 - - tpra:123913572 109.383