Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00068 ATGTCTTTCCATCATGACACTAGTGCTTTTAGTTTCAAGTTTAACAAAGTAATTCAAGATCCAGATCGACAAAAGAAAGAACTCAGGATTCCCCCGGCTGTTGTGATGAAATATTGGAAAGTAATGCCAAATCCAATACTTCTCAAACTTCCAAATGGTGCTGGATGGGAAATATCATGGGAAAGTCATGATAGTGGCATTTGGCTTAAGAAAAATTGGAATAAATTTGCACAGTCTCTATCACTTGGTTATGGATATTTTTTAGTTTTCAAGTATAAAGGAGGATCAAATTTCCTTGTTGAGGTATTTCATTATAATAGTTTAGAAATAGACTATTCAAGTATAAGATGCATCAATGATGGTGAAGGTTCCAATGAACATCAAAAACAAATTGTGGAGGAGGAGGATTGTCTGGAGATTGTGGATCTATGTGAAAGACTCACACAACCTCTTAAGAAAAAGAAAGCCAACCCAAGTGAAGAATGTAAAAACTACAACAACCCACATTTTGAAGCTAACAATGCTCCATCTAAGAGGATAAGCATTAATGGCAAGAGAAAAATGAATGCAGGGGCTAACAGGGGAGACATAATTAAGGCCAAGAATTACTCATCAAAAAAAGCTGAAGTTAAAGAGATGATGGCCAAGAATTTTCATTTGGAGAACCCTTTTTTCATACTTATATTGAAGCCAAGTTATGTGCAGAGCAATATATTGATGGTACCATGTGAGTTTTCGAGAAAATATTTGAAGGACTTAGAAGGGATTACAATAATTCAGGTTGATGGAGATGAGAATAGGTGTGGAAATCGTGTTAGTTTCAAGTTCTGTGATCCTGAAAAACGAACTAGATTCAGCACTGGTTGGAAGCTATTTACTCACAAATATAACTTACAAGCTGGTGATTGTTGTATATTTGAGATGACTCAACAAGCACCACCACTTTCATTCAAAGTTACTATTATCAGAGCTAAAGAATTACCAAGTTTTATGCAACTGAAAGATTCTGTTGAAAGTCATGATATAAATCAGAATACATTCCAGCTGGTTCTTGTAACAAAAAATCAACCGCATTGCATACCAAGATGGTTCATGGAGAGACACAGATGTAATGGAAAATTCGTGAAGCTGAAAGTAGAGGAAACATCGTGGGATGTAAGAGTGATCTGCAACTATCCGAATGTGGGTTTTGGTAGATTCTGTGGAGGTTGGCCTGCATTTGTGAGAGAATGCAAATTGAACATTGGAGACATTTGTAAGTTTGAGATGGTTGATGAGGAAAAGCTTGTGCTCAAAGTTTCAATCACAAAATGTGGCCAACAGTACTGA 1329 0.3627 MSFHHDTSAFSFKFNKVIQDPDRQKKELRIPPAVVMKYWKVMPNPILLKLPNGAGWEISWESHDSGIWLKKNWNKFAQSLSLGYGYFLVFKYKGGSNFLVEVFHYNSLEIDYSSIRCINDGEGSNEHQKQIVEEEDCLEIVDLCERLTQPLKKKKANPSEECKNYNNPHFEANNAPSKRISINGKRKMNAGANRGDIIKAKNYSSKKAEVKEMMAKNFHLENPFFILILKPSYVQSNILMVPCEFSRKYLKDLEGITIIQVDGDENRCGNRVSFKFCDPEKRTRFSTGWKLFTHKYNLQAGDCCIFEMTQQAPPLSFKVTIIRAKELPSFMQLKDSVESHDINQNTFQLVLVTKNQPHCIPRWFMERHRCNGKFVKLKVEETSWDVRVICNYPNVGFGRFCGGWPAFVRECKLNIGDICKFEMVDEEKLVLKVSITKCGQQY 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00068 442 CDD B3_DNA 12 103 IPR003340 GO:0003677
Sebi12g00068 442 Pfam B3 DNA binding domain 225 324 IPR003340 GO:0003677
Sebi12g00068 442 Pfam B3 DNA binding domain 353 435 IPR003340 GO:0003677
Sebi12g00068 442 Pfam B3 DNA binding domain 15 103 IPR003340 GO:0003677
Sebi12g00068 442 SUPERFAMILY DNA-binding pseudobarrel domain 219 325 IPR015300 -
Sebi12g00068 442 Gene3D - 203 327 IPR015300 -
Sebi12g00068 442 Gene3D - 332 439 IPR015300 -
Sebi12g00068 442 Gene3D - 8 107 IPR015300 -
Sebi12g00068 442 ProSiteProfiles B3 DNA-binding domain profile. 13 106 IPR003340 GO:0003677
Sebi12g00068 442 SMART B3_2 14 106 IPR003340 GO:0003677
Sebi12g00068 442 SMART B3_2 224 325 IPR003340 GO:0003677
Sebi12g00068 442 SMART B3_2 347 439 IPR003340 GO:0003677
Sebi12g00068 442 CDD B3_DNA 360 437 IPR003340 GO:0003677
Sebi12g00068 442 CDD B3_DNA 223 323 IPR003340 GO:0003677
Sebi12g00068 442 ProSiteProfiles B3 DNA-binding domain profile. 224 325 IPR003340 GO:0003677
Sebi12g00068 442 SUPERFAMILY DNA-binding pseudobarrel domain 354 437 IPR015300 -
Sebi12g00068 442 SUPERFAMILY DNA-binding pseudobarrel domain 14 106 IPR015300 -
Sebi12g00068 442 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 348 436 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00068 Sebi-Chr12 1569942 1572172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00068 360 434 B3 DNA Binding Superfamily AT3G18990 35.526 1.81e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi12g00068 B3 2.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00068 - - lja:Lj0g3v0114559.1 305.449