Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00064 ATGACTTGTAACAGGCGAAAGAAGCGTTCTGTTCCCTCTGCTGCAAATGCAATCCGTTTCTTTAAGATTATTACAACAACAATTCTTGAAGTTGAAGCTGCAAAGCTTAAGATTCCAAACGGTTTCACTAAGAAATATGGTGGTGATATGTCAAACCCAATGTATCTCAAGCCTCCAGATGGCACTGAATGGAAAATATATTGGACTAAGCATGATTCTGATATTTGGTTTCAAAATGGTTGGAAAGAATTTGCTACAAATTACTCCTTAGATCATGGACACATGGTGTTGTTTGAATACAAGGATACTTCTCATTTTGAGGTACATATATTTGACAAGAGTACCCTTGAAATACAATATCCTTTCCAATTCCATGGTAGCCAAGAAAACCTTGACAAGATCAGTGATGACTCTGTTGAAATTTTGGATGAGCTGCCTCCATCTTCATGCAAGAAGACTAAACTGAAATCACCAATGTCAAGTCCTCAACCAAGTAAGAAATTGAAAACTGGCACAAGTGGAAAAGTTGAAAGAAGCCCCAAATTGCAAAACATGGGTAAACATGTCAAAATTAAAGGTAGTCAGTCTCAAGGGACAAACTTTGAGAAATCATCATTTGCATCTGACAAGGAAGAATTGGATAGTGATGGAGTCAATTGTATAGACCCTGGGAGAGTCCCGGACAATGAAGGTGAGATGGCAACTCAACGAAGTGCTCTACACCCCTTCATAAATGAAGCTCTGAAAGAAGCTAGTAAATTCACCTCGGAAAATCCCTTTTTCATAGTCTATGTAAAGCCAGATCAGGGGCACTATTACAGACCGTATGTACCAAATGCCTTCATCACAAAGTACTTCTACAAAAGGAAGCGGATTGTGAAGTTACAGTTTGGAAAGAAATTGTGGCCTATCAAGTTGCTCTATTATCCACGCGGAGCCAAGTTGTCTGGAGGTTGGTCTCTATTTGCAAGAGAAAGTAAATTGTTAGGTGGAGACGTATGTGTGTTTGAGCTCATCAATAGGGAAGATTATATGCTTGATCTTCATATTTTCAGAGACAATTGA 1065 0.3878 MTCNRRKKRSVPSAANAIRFFKIITTTILEVEAAKLKIPNGFTKKYGGDMSNPMYLKPPDGTEWKIYWTKHDSDIWFQNGWKEFATNYSLDHGHMVLFEYKDTSHFEVHIFDKSTLEIQYPFQFHGSQENLDKISDDSVEILDELPPSSCKKTKLKSPMSSPQPSKKLKTGTSGKVERSPKLQNMGKHVKIKGSQSQGTNFEKSSFASDKEELDSDGVNCIDPGRVPDNEGEMATQRSALHPFINEALKEASKFTSENPFFIVYVKPDQGHYYRPYVPNAFITKYFYKRKRIVKLQFGKKLWPIKLLYYPRGAKLSGGWSLFARESKLLGGDVCVFELINREDYMLDLHIFRDN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00064 354 ProSiteProfiles B3 DNA-binding domain profile. 260 354 IPR003340 GO:0003677
Sebi12g00064 354 SMART B3_2 260 354 IPR003340 GO:0003677
Sebi12g00064 354 SMART B3_2 21 114 IPR003340 GO:0003677
Sebi12g00064 354 PANTHER B3 DOMAIN-CONTAINING 16 342 - -
Sebi12g00064 354 CDD B3_DNA 19 112 IPR003340 GO:0003677
Sebi12g00064 354 CDD B3_DNA 260 352 IPR003340 GO:0003677
Sebi12g00064 354 MobiDBLite consensus disorder prediction 147 209 - -
Sebi12g00064 354 Gene3D - 13 115 IPR015300 -
Sebi12g00064 354 Pfam B3 DNA binding domain 260 353 IPR003340 GO:0003677
Sebi12g00064 354 Pfam B3 DNA binding domain 25 113 IPR003340 GO:0003677
Sebi12g00064 354 MobiDBLite consensus disorder prediction 153 170 - -
Sebi12g00064 354 Gene3D - 244 354 IPR015300 -
Sebi12g00064 354 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Sebi12g00064 354 SUPERFAMILY DNA-binding pseudobarrel domain 18 114 IPR015300 -
Sebi12g00064 354 SUPERFAMILY DNA-binding pseudobarrel domain 254 352 IPR015300 -
Sebi12g00064 354 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00064 Sebi-Chr12 1496134 1498287 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00064 20 354 B3 DNA Binding Superfamily AT3G18990 30.571 1.02e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi12g00064 B3 8.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00064 - - lang:109359484 343.969