Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00063 ATGACTTGCAACAACAGAAACAACCATTCTGTTCCTTCTCTCATCCGTTTCTTTAAGATTATCACAACAACTACTCTTCAAGCTGCAAAGCTTAAGATTCCAAACGGTTTCACTAGGAAATATGGTGGTGATATGTCAAACCCAATGTATCTCAAGCCTCCTGATGGCATTGAATGGAAAGTGTATTACACTAAACATGACACTGATATTTGGCTTCAAAAGGGTTGGAAAGAGTTTGCTACACATTACTCCCTAGATCATGGCCACATGGTGTTGTTTGAATACATGGATAGTTCTGATTTTGAGGTACATATATTTGACAAGAGTACCCTTGAAATACAATACCCTTTCCATGCCACTCAAGATGAACAGGACAACATTAGTGACAACTCAGTTGAAATTTTGGAAGAACTACCTCCATCTTCATGCAAGAAGAGGAAGACTAAAAAGAAATCACCAATGTCATGTCCTCAACCATGTCAGAAATTGAGAACTGGCACAGGTGATGTTAGAAGAAGCCACAAAAAGCAAAACTTGCCTAAACATGTCCAAATTAAAGAGGATATGGGTGGTACCACTGAATGCCTTGGAGTGGAAAAGTTAACTTGTAAAGTTAATGAAGCTTTAAAGAGAGCCACAGCCTTCAGATCTGAAAATCCCTCTTTCATGGTTGAAATGAAACCTTCTTATGTTGCACATAACTTGTTTCAATCTTTCGAGTTGGGGAAGAACCACATTCCCCTCCACCACAAGAATCAGTTCAAGGAGGTGAAGGTCAATTGGATAGACCCTTGGACTTGGGACATTGAAAGTACAACTATTAGGTAA 828 0.3913 MTCNNRNNHSVPSLIRFFKIITTTTLQAAKLKIPNGFTRKYGGDMSNPMYLKPPDGIEWKVYYTKHDTDIWLQKGWKEFATHYSLDHGHMVLFEYMDSSDFEVHIFDKSTLEIQYPFHATQDEQDNISDNSVEILEELPPSSCKKRKTKKKSPMSCPQPCQKLRTGTGDVRRSHKKQNLPKHVQIKEDMGGTTECLGVEKLTCKVNEALKRATAFRSENPSFMVEMKPSYVAHNLFQSFELGKNHIPLHHKNQFKEVKVNWIDPWTWDIESTTIR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00063 275 CDD B3_DNA 16 107 IPR003340 GO:0003677
Sebi12g00063 275 SMART B3_2 17 109 IPR003340 GO:0003677
Sebi12g00063 275 PANTHER B3 DOMAIN-CONTAINING 8 226 - -
Sebi12g00063 275 Pfam B3 DNA binding domain 17 108 IPR003340 GO:0003677
Sebi12g00063 275 SUPERFAMILY DNA-binding pseudobarrel domain 13 109 IPR015300 -
Sebi12g00063 275 Gene3D - 202 271 IPR015300 -
Sebi12g00063 275 Gene3D - 13 110 IPR015300 -
Sebi12g00063 275 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Sebi12g00063 275 MobiDBLite consensus disorder prediction 138 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00063 Sebi-Chr12 1480844 1482998 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00063 17 231 B3 DNA Binding Superfamily AT3G18990 28.063 5.34e-23 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi12g00063 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00063 - - lja:Lj5g3v0508090.1 281.952