Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00061 ATGCAGAAGATTCCAAACAATTTCACTAGGAAATATGGTGGTGATATGTCAAACCCTATATTTCTCAAGCCTCCAGATGGCACTGGATGGAGAATATATTGGACTAAATATGATGGTGATATTTGGTTTCAAAAGGGTTGGAAAGAATTTGCTACATATTACTCTCTTGATTACGGGCATATGGTGTTGTTTGAATACAAGGATACTTGTCATTTTGAGGTGCATATATTTGACAAGAGTACCCTTGAAATACAATATCCTTTCCATGCCAAAGATGAACAGGACAAGATTAGTGACAACTCTGTTGAAATTTTGGAAGAACTACCTCCATCTTCATGCAACAAGAGGAAGACTAAACTGAAATCACCAGTGTCATGTCCTCAACCACATAAGAAATTGAGAACTAGCACAAGTGGAGATGTTGAAAGAAGCTCCAAATTGCAAAACATGCCTGAACATGTACAAATTAAAGGTCTTGGAGGGGAGAACTTGGCATCATTGGGGAAGAACTACATTCCCCTCTACCACAAGGATATGGGTGTTACCACTGAATGCCTAAAAGTGGAGCAGTTAACTTCTGAAATTACTAAAGCTGTAATGGGAGTCACAAACTTCAGATCTAAAAATCCCTCTTTCATGGTTGTCATAAAACCTGCCTATCTTCGTCATTACATGAATGTCCCATCAGAGTTTATAGCAAAATATTTGAAGAAAAAGCGAAGTGATATCCTCCTTCAGGTATTGAACAGGAGAACTTGGCTCGTTAGTTATACGTTTGGCAAAATTACTACTGGATGGAAGAAATTTGCATCAGGTTTAATCTTTCGAGTTGGGGAAGAAATACATTCCCCTCCACCACAAGAATCAATTCAAGGCGATGGAGTCAATTGGCGAGACCTTGGGAGAATCCCACACATTGAAAGTAAAACTATTATTATCAGTGGAGGTGGGAAGGCAACTCAACGAACTTCACGGCTGATTACTAGTCCCAACTCCTTCACAAATGGAGCTCTTGAAGAAGCTAACAAATTCACCTCACAAAATCCCTTTTTCACAGTCATTATAAAGCCAGATTTTCATGAGGATTATAGACCGCGTGTACCAAATGCCTTCGTCAGAAACTACTTCAATAACAAGCAGCAGATGGTGATGTTACAATACGGAAATAAACTGTGGGATGTGAAGTTGATCTGTTACCCACATGCAGGTTCAAGCAAGTTTTCTAGAGGTTGGACCCTATTTGCCAGAGAAAGTAAATTGTTAGGTGGAGATGTTTGTGTCTTTGAGCTCATAAACCGGGAATATCACATGCTTCATGTTCATATTTTCAGAGGCCACTATTAG 1344 0.3929 MQKIPNNFTRKYGGDMSNPIFLKPPDGTGWRIYWTKYDGDIWFQKGWKEFATYYSLDYGHMVLFEYKDTCHFEVHIFDKSTLEIQYPFHAKDEQDKISDNSVEILEELPPSSCNKRKTKLKSPVSCPQPHKKLRTSTSGDVERSSKLQNMPEHVQIKGLGGENLASLGKNYIPLYHKDMGVTTECLKVEQLTSEITKAVMGVTNFRSKNPSFMVVIKPAYLRHYMNVPSEFIAKYLKKKRSDILLQVLNRRTWLVSYTFGKITTGWKKFASGLIFRVGEEIHSPPPQESIQGDGVNWRDLGRIPHIESKTIIISGGGKATQRTSRLITSPNSFTNGALEEANKFTSQNPFFTVIIKPDFHEDYRPRVPNAFVRNYFNNKQQMVMLQYGNKLWDVKLICYPHAGSSKFSRGWTLFARESKLLGGDVCVFELINREYHMLHVHIFRGHY 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00061 447 ProSiteProfiles B3 DNA-binding domain profile. 350 446 IPR003340 GO:0003677
Sebi12g00061 447 SUPERFAMILY DNA-binding pseudobarrel domain 206 272 IPR015300 -
Sebi12g00061 447 CDD B3_DNA 4 78 IPR003340 GO:0003677
Sebi12g00061 447 Pfam B3 DNA binding domain 350 445 IPR003340 GO:0003677
Sebi12g00061 447 Pfam B3 DNA binding domain 3 79 IPR003340 GO:0003677
Sebi12g00061 447 Gene3D - 1 81 IPR015300 -
Sebi12g00061 447 SMART B3_2 212 287 IPR003340 GO:0003677
Sebi12g00061 447 SMART B3_2 350 446 IPR003340 GO:0003677
Sebi12g00061 447 SMART B3_2 1 80 IPR003340 GO:0003677
Sebi12g00061 447 ProSiteProfiles B3 DNA-binding domain profile. 1 80 IPR003340 GO:0003677
Sebi12g00061 447 MobiDBLite consensus disorder prediction 129 145 - -
Sebi12g00061 447 PANTHER B3 DOMAIN-CONTAINING 342 444 - -
Sebi12g00061 447 CDD B3_DNA 210 271 IPR003340 GO:0003677
Sebi12g00061 447 SUPERFAMILY DNA-binding pseudobarrel domain 3 80 IPR015300 -
Sebi12g00061 447 CDD B3_DNA 350 444 IPR003340 GO:0003677
Sebi12g00061 447 SUPERFAMILY DNA-binding pseudobarrel domain 344 444 IPR015300 -
Sebi12g00061 447 Gene3D - 191 280 IPR015300 -
Sebi12g00061 447 Gene3D - 332 446 IPR015300 -
Sebi12g00061 447 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00061 Sebi-Chr12 1453892 1456966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00061 337 444 B3 DNA Binding Superfamily AT3G18990 36.937 1.87e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi12g00061 B3 2.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00061 - - lja:Lj5g3v0508090.1 466.848