Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00058 ATGGATTCTCTTCCCTCTTCTGAAAACCCGAACCCAACCTTCCCTTCTGCACCACCTGGAATTCCAACCCCAATAGTAACCCCAAAGCTTGAACCTTCAGACGAATGGGCCGCACCAAGCCCACCCGGTTTCTCAAACGGGTCCCACCAACTCGACCTCAACCTCTTCTGCAACGAAACCCTAGCCGGTGGCTCCTCCGACCACCACACTGCCACCACCAACAACGACAATTTGTACTCTGAGTTCAACCGAGTCTCCGAGCTCTTTCGAACCGCTATGGGCCTTCAGCAATCCCAAAACGACACCGTTCCAGACCCGGATTCACGCGCAATCGTTCCGGTTCCACCGCCGCCGGAGAACAACAACGGCACTGACGGAAACCCTTCGTCGGTGGCCGTCGTGACGCCGCGGCAACGGAAATGGAAGGAGCTGGTGAGGGTGACGGATGTCGGCGTGATGGAGCAGCGGCACTTCCGCGACGTGGTTCGGAGGACTCGAATGGTGTACGATTCTCTTCGTGTGTTAGCGGCGGCAGAAGAAGAGGGAAGGATGGATGTGCGGAGGGTGAGGAGCGATTTGAGGGCTTCAGCAGTGATGAGAAACTGCGGGTTGTGGCTGAATCGTGATAAAAGGATAGTTGGGGCAATTCCAGGGGTTTGCATTGGTGATGTGTTTCTTTACAGGATGGAATTGTGTGTGGTTGGTTTGCACGGTCAACCACAGGCTGGGATTGATTATCTACCTGCTAGCATGAGTTCAAATGGTGAACCAATTGCCACAAGTGTTATAGTCTCTGGTGGGTATGAGGATGATTTGGATGAGGGTGATGTGATCATCTATTCTGGTCATGGTGGCCAGGACAAGCATTCAAGGCAGGTTTTTCATCAGAAGTTGGAAGGAGGGAACCTTGCTATGGAGAGAAGCATGCATTATGGGGTTGAAGTGAGGGTTATTCGAGGTGTTCGGTGTGAGGGGACTGCCGCTGCTTCTGGTAAGGCTAAGATGGGTAGTATGGTTATGAAGGAAGCTCTTATGCTTAGGAGAGATCCGTTGAGTTTTAAACCAATGTGCTGCCTGTCTCTTGATGTTTCCAACAGGAAGGAGAATGTTCCCGTGAGGCTTTTCAATGACATTGATCGGAATCATGATCCTCTTTGTTATGAGTACCTTGCAAAGACTACTTTTCCGCAGTTTGTGTTTCATCAGAGTGGGAGGGCCACAGGTTGTGAGTGCGTGGACGGTTGTATGGATGGATGCTTTTGTGCCATGAAGAATGGAGGAGAGTTTCCTTATAGTCAAAATGGGATTCTCTTGAGAGGGAAGCCTATAATTTTTGAATGCGGCCCTTTTTGTGGCTGTCCTCCTCATTGTCGGAACCGTGTCACGCAAAAAGGGCTGAAAAATAGGTTGGAAGTATTTAGATCAAGGGAGACTGGTTGGGGAGTTAGGTCTTTGGATCTTATTCAAGCTGGAGCTTTTATCTGTGAGTACACTGGGGTTGTTCTGACTAGGGAGCAAGCACAAATTTTGACCATGAATGGTGATACATTGATATATCCAAATCGATTTACTGATAGGTGGGCAGAATGGGGGGATTTGTCTTTGATAGACTCCAATTATGTCCGGCCTTCATATCCATCAATTCCTCCTTTAGATTTTTCTATGGATGTGTCAAGAATGAGGAATGTTGCTTGCTATATTAGTCATAGTTCAACTCCTAATGTCTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTTAGCCTTGATTATGGGGTAGCTGATGAGTTGACAGGCAAGCTCTCTATATGTAACTGA 1875 0.4827 MDSLPSSENPNPTFPSAPPGIPTPIVTPKLEPSDEWAAPSPPGFSNGSHQLDLNLFCNETLAGGSSDHHTATTNNDNLYSEFNRVSELFRTAMGLQQSQNDTVPDPDSRAIVPVPPPPENNNGTDGNPSSVAVVTPRQRKWKELVRVTDVGVMEQRHFRDVVRRTRMVYDSLRVLAAAEEEGRMDVRRVRSDLRASAVMRNCGLWLNRDKRIVGAIPGVCIGDVFLYRMELCVVGLHGQPQAGIDYLPASMSSNGEPIATSVIVSGGYEDDLDEGDVIIYSGHGGQDKHSRQVFHQKLEGGNLAMERSMHYGVEVRVIRGVRCEGTAAASGKAKMGSMVMKEALMLRRDPLSFKPMCCLSLDVSNRKENVPVRLFNDIDRNHDPLCYEYLAKTTFPQFVFHQSGRATGCECVDGCMDGCFCAMKNGGEFPYSQNGILLRGKPIIFECGPFCGCPPHCRNRVTQKGLKNRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQAQILTMNGDTLIYPNRFTDRWAEWGDLSLIDSNYVRPSYPSIPPLDFSMDVSRMRNVACYISHSSTPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADELTGKLSICN 624
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00058 624 Pfam SAD/SRA domain 213 324 IPR003105 -
Sebi12g00058 624 MobiDBLite consensus disorder prediction 1 47 - -
Sebi12g00058 624 ProSiteProfiles YDG domain profile. 214 365 IPR003105 -
Sebi12g00058 624 MobiDBLite consensus disorder prediction 11 26 - -
Sebi12g00058 624 SUPERFAMILY PUA domain-like 195 324 IPR015947 -
Sebi12g00058 624 ProSiteProfiles Pre-SET domain profile. 407 465 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi12g00058 624 SMART G9a_1 209 352 IPR003105 -
Sebi12g00058 624 MobiDBLite consensus disorder prediction 97 135 - -
Sebi12g00058 624 Gene3D SET domain 336 624 IPR046341 -
Sebi12g00058 624 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 58 624 IPR025794 GO:0016571
Sebi12g00058 624 SMART preset_2 360 452 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi12g00058 624 ProSiteProfiles SET domain profile. 468 611 IPR001214 GO:0005515
Sebi12g00058 624 Gene3D - 196 335 IPR036987 -
Sebi12g00058 624 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 84 612 - -
Sebi12g00058 624 Pfam Pre-SET motif 364 460 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Sebi12g00058 624 Pfam SET domain 479 611 IPR001214 GO:0005515
Sebi12g00058 624 SUPERFAMILY SET domain 352 612 IPR046341 -
Sebi12g00058 624 SMART set_7 468 617 IPR001214 GO:0005515
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Sebi12g00058 Sebi-Chr12 1426504 1428483 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00058 159 613 Su(var)3-9 homologs AT5G04940 36.122 6.06e-89 288
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Sebi12g00058 SET 5.8e-13 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00058 K11420 - gmx:100795514 969.918