Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00055 ATGACTAAAGGTTTCAAAGACAAGTTGGGTGAAGGAGGCTTTGGCTCTGTTTTCAAGGGGAACCTGCGTAGTGGGCCTTGTGTTGCAATAAAGATGTTGAGCAAATCCAAAGGAAGTATACATTTAAGCTATGACAACATATTTGATATATCAATTGGAGTAGCTCATGGGATTGCTTATCTCCACCATGGATGTGAAATGAAGATTCTACATTTTGATATCAAACCCCACAACATCCTTCTTGATGAGAACTTCACTCCAAAGGTCTCTGATTTTGGATTGGCAAAGTTGTATTCTGTGGATAATAGCATTGTCACAATGACTGCAGCAAGAGGAACAATTGGGTACATGGCTCCAGAATTGTTCTACAAAAATTTTGGAGGAGTGACCTATAAGGCTGATGTCTATAGCTTTGGGATGCTTTTGATGGAGATGGCAAGCAAGAGGAAAAACTTGAATCCCCATGTTGAGCATTCTAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTGGAAAAGAGGAAGAGATTGAGATGGAAGATGTCACGGAAGAGGAAAAGAAAATGGTGAAGAAGATGATTATAGTTGCACTTTGGCTCCCTTCACCATTCATTCAGGATCTTTGCCAAGCGTTTCCTCCAATTTATTATTCAAAGGATGAAAATACTTCTGTGGAATCCAAAAAATCTGATCTACCTGGATATGCTGTTTTAATCACCTCCAAAGGCTCTATTATAATAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGACTTATGTCAAAAGGGGCACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTGATTCAGGCAGGTCATGAGAAAGGGCCAGGAGCTACTGAAGATTGGAACCTGAGAGGAAAGAAATATACAAGTATGAATCACGAAGCTTTCATGCTTGGAACTTCTAAGGGAAAATACTTAAATAAAGGATTTGATCTTTTCATCACAACTGCACCAATACCAGATCTAAATGAGAAGCTTGTTGTTTTTGGCCGGGTCGTCAAGGGAGAGGATGTAGTTCAGTCAATTCTTTTCTACAGGAATGATGAACCTCAAGGATTTTACCTTGGACTAAATGGAAGAAATTATTTGAAGTGGGCCCAACTTGTTCGTACAGTGTTGAAGGGAAAGGGGAAGTTGAGTCACCTGACGGAGTCTGGACCTAAACAGGAGGATCCCAAGTTTACTACATGGGATGAGGAAGATTCATTGATCATGGCGTGGCTGTGGAATTCAATGATTCCAGAAATCAGCGACACCTGCATGTTCCTTAATTCGGCAAAAGAGATTTGGGATGCTGTAGAGCAAACCTACTCTAAAGCCAAAGATGCTGCTCAAGTATATGAAGTAAAGGTGAAAACTTTGGTAGCAAAACAAGGGAACAAGACTGTTACAGAATATGCCAATCAGCTGAAATCATTATGGATGGAGCTAGACCATTATAGAGTCATAAAAGCCAAATGTACTGAAGATTCAGCACTTCTCAAGGAGTATATCGAACAAGACAGAGTTTATGATTTCCTTGTTGGTTTGAATCCTGAATTTGATCAAGTTAGGATTCAAATATTGGGGAAGCAAAAGGTACCATGCTTCAATGAAGTGGTGGCTATTGTGAGAAGTGAAGAAAGTAGAAGGGGTCTCATGTTAGAGAGTCCAGCAGTAGAGAACTCAGCAATGGTGGCTGACCATAAAGGAGATCAGACTTTGGCCATGGTAGCCGAACAGAAGAAAGGAGGATCAGCAAATGTGGAGAAGAAAAGTGATGGTCTCTGGTGTACCTACTGCAATAAGCCTCGTCATACCCGAGAGAAGTGCTGGAAGTTGTATGGGAAGCCTTTAAATCGAGATCGAGAAGGGGGACACAGAGGAGGCTCCTCAAGGAAAGGAGGACAAGTTTATGTTGCTGCTGGAACAAATGAAGAAAATAAACCAGAAGCTGCTGACCATCTTAACCAAGAGGAGATAGAAAGGGTGAGAACCTTTCTTAGTAAGCTGGAAAAACCTCCAGGTGTGTGTTCTTTGGCATACTCAGACTTGACAGACTTGATATTTGAACCTAAACTAGATCAAATTGAAGCTGTAACAAGTGAAACAAGTCAAGGAAGTGAAGCTGGTCAAGGAATTGGTCAAGAAAAGGAAGTTGGTCAAGAAAGTGAAATTAATTGTGAAGCTGATCAAGGAGATGTTGAAGCTGGAAAATTTGGTAAGAAGCTGGTGTACTCAAGGAAGACTAAGGCCATTCCAGGATCAAGCCATGTTCAAGAATCCAACTCGACTCCACAAAAAAAGAAAAGGGACAAGAAAATGCACCAAACAGCCACTCTACCCTCTCTCAAATTACCTGTCCTTTGA 2403 0.4074 MTKGFKDKLGEGGFGSVFKGNLRSGPCVAIKMLSKSKGSIHLSYDNIFDISIGVAHGIAYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYSVDNSIVTMTAARGTIGYMAPELFYKNFGGVTYKADVYSFGMLLMEMASKRKNLNPHVEHSSQLYFPFWIYDQLGKEEEIEMEDVTEEEKKMVKKMIIVALWLPSPFIQDLCQAFPPIYYSKDENTSVESKKSDLPGYAVLITSKGSIIIELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQAGHEKGPGATEDWNLRGKKYTSMNHEAFMLGTSKGKYLNKGFDLFITTAPIPDLNEKLVVFGRVVKGEDVVQSILFYRNDEPQGFYLGLNGRNYLKWAQLVRTVLKGKGKLSHLTESGPKQEDPKFTTWDEEDSLIMAWLWNSMIPEISDTCMFLNSAKEIWDAVEQTYSKAKDAAQVYEVKVKTLVAKQGNKTVTEYANQLKSLWMELDHYRVIKAKCTEDSALLKEYIEQDRVYDFLVGLNPEFDQVRIQILGKQKVPCFNEVVAIVRSEESRRGLMLESPAVENSAMVADHKGDQTLAMVAEQKKGGSANVEKKSDGLWCTYCNKPRHTREKCWKLYGKPLNRDREGGHRGGSSRKGGQVYVAAGTNEENKPEAADHLNQEEIERVRTFLSKLEKPPGVCSLAYSDLTDLIFEPKLDQIEAVTSETSQGSEAGQGIGQEKEVGQESEINCEADQGDVEAGKFGKKLVYSRKTKAIPGSSHVQESNSTPQKKKRDKKMHQTATLPSLKLPVL 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00055 800 SMART serkin_6 3 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi12g00055 800 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 239 362 IPR002130 GO:0000413|GO:0003755
Sebi12g00055 800 MobiDBLite consensus disorder prediction 712 734 - -
Sebi12g00055 800 MobiDBLite consensus disorder prediction 762 800 - -
Sebi12g00055 800 ProSiteProfiles Protein kinase domain profile. 1 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi12g00055 800 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Sebi12g00055 800 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 220 359 - -
Sebi12g00055 800 Gene3D - 219 369 IPR029000 -
Sebi12g00055 800 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Sebi12g00055 800 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 329 341 IPR002130 GO:0000413|GO:0003755
Sebi12g00055 800 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 250 265 IPR002130 GO:0000413|GO:0003755
Sebi12g00055 800 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 342 357 IPR002130 GO:0000413|GO:0003755
Sebi12g00055 800 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 276 288 IPR002130 GO:0000413|GO:0003755
Sebi12g00055 800 CDD cyclophilin 238 360 - -
Sebi12g00055 800 Pfam Protein kinase domain 43 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi12g00055 800 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 244 360 IPR002130 GO:0000413|GO:0003755
Sebi12g00055 800 SUPERFAMILY Protein kinase-like (PK-like) 6 169 IPR011009 -
Sebi12g00055 800 Gene3D Transferase(Phosphotransferase) domain 1 4 204 - -
Sebi12g00055 800 SUPERFAMILY Cyclophilin-like 232 364 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00055 Sebi-Chr12 1302762 1316158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00055 1 200 Receptor kinase-like Gene Family AT1G66930 42.358 4.22e-50 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Sebi12g00055 Pkinase 2.1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00055 - - var:108322544 613.994