Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi12g00024 ATGCCACGCCCTTCTTTCCACAAGCTTATTCTGCCCACAACACTCCAATCCAGGCAACTGAGGATTCCAGATAATTTTCTGAGGAAATATGGGGGTCAGCTTTCGACAATTGCTACCCTCACTGTTCCTGATGGTAGTGTTTGGCGTGTGGGAGTAAAGAAGGCAGACAACAGAATTTTTTTCCTTGATGGTTGGCAAGAATTTGTTCAGCGCTACTCCATAGGTGTTGGATACCTTTTAGTATTCATGTATGAAGGGAATTCATCTTTCATTGTTCATATTTTTAATATGAGTACATCTGAGGTAAATTATCAATCAGCCATGAGAAGCCGTAATGAAGGACCTTGCTATGCAAATTATCATCATATTTTTGACGAAATGGAAGATACAGACTCCTTTGAATTTTTCGATTCGTCACCTTCAAACCTTACTCCTGGTGCATTGCAAAACAAGGTTTTTGCTGGATCTGTAGATCAAATGACACCTGGGAAGAGTCATACTCCTGCATTGCAGAATTTGTTTAATGGTGGGTCTAAACTCAATCGTGTAAACTGGGGAGATAGTGGGAGCGCATTTTCTTCAAAAGGTGTCAACTCACAGGACATTCACTCAACCAGAGATATAGGTGTTCAGTTCAATGCTGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTGCGTTATTCTAATAACGAGGAAGGGGTTAATAAAACTGTACGAAAGAGGCGGAAATCAGATCCCAATGGCCAGGAACCCTCTGCTGAAAATGAAGAGGAGGTAGAAATGCGCTATAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCGGAAGAAAGAGAGAGGGCAATTAATGCAGCAAAAGCATTTGAACCACCAAATCCTTTTTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCTTCATGCTTTGCAGAAAAGAATTTGAATGGGGTTTCGGGATTCATTAAACTTCAGATTGCCGATGGGAGGCAGTGGCCTGTTCGCTGCCTCTATAGAGGAGGTCGAGCAAAGTTAAGCCAGGGTTGGTTTGAATTTACATTAGAGAACAATTTAGGGGAAGGTGATGTATGTGTGTTTGAGCTGCTTAGAACCAAGGATGTAGTGCTGCAAGTTACTACATTTCGTGTAATTGAGGATACAGGGTTGTTGAACCCTCCTATGCAGCAGAGCCAAAATGTGAGCCATACTAAAATGTTGAACCCTCACTTGCAGCATCGCGTCAGTACTACCAAAATGGTTAGAAATTAG 1299 0.4142 MPRPSFHKLILPTTLQSRQLRIPDNFLRKYGGQLSTIATLTVPDGSVWRVGVKKADNRIFFLDGWQEFVQRYSIGVGYLLVFMYEGNSSFIVHIFNMSTSEVNYQSAMRSRNEGPCYANYHHIFDEMEDTDSFEFFDSSPSNLTPGALQNKVFAGSVDQMTPGKSHTPALQNLFNGGSKLNRVNWGDSGSAFSSKGVNSQDIHSTRDIGVQFNAVEFKRSTEELKLRYSNNEEGVNKTVRKRRKSDPNGQEPSAENEEEVEMRYRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQIADGRQWPVRCLYRGGRAKLSQGWFEFTLENNLGEGDVCVFELLRTKDVVLQVTTFRVIEDTGLLNPPMQQSQNVSHTKMLNPHLQHRVSTTKMVRN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi12g00024 432 CDD B3_DNA 4 96 IPR003340 GO:0003677
Sebi12g00024 432 ProSiteProfiles B3 DNA-binding domain profile. 299 394 IPR003340 GO:0003677
Sebi12g00024 432 Gene3D - 1 99 IPR015300 -
Sebi12g00024 432 PANTHER B3 DOMAIN-CONTAINING 3 382 - -
Sebi12g00024 432 SUPERFAMILY DNA-binding pseudobarrel domain 292 392 IPR015300 -
Sebi12g00024 432 CDD B3_DNA 297 392 IPR003340 GO:0003677
Sebi12g00024 432 SMART B3_2 299 394 IPR003340 GO:0003677
Sebi12g00024 432 SMART B3_2 6 98 IPR003340 GO:0003677
Sebi12g00024 432 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Sebi12g00024 432 Pfam B3 DNA binding domain 302 392 IPR003340 GO:0003677
Sebi12g00024 432 Pfam B3 DNA binding domain 11 96 IPR003340 GO:0003677
Sebi12g00024 432 MobiDBLite consensus disorder prediction 234 259 - -
Sebi12g00024 432 Gene3D - 276 396 IPR015300 -
Sebi12g00024 432 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi12g00024 Sebi-Chr12 448063 450692 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi12g00024 1 398 B3 DNA Binding Superfamily AT3G18990 52.078 4.44e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi12g00024 B3 8.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi12g00024 - - gmx:100789352 751.125