Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi129g00033 ATGGCTCCTTACTTTATGTTTTTGGTGATGTTCAAAGATGACCCATATGGTGGACCCCCACGTCAATGGCAACACAATGCTCCCCCTCCTTCAGATCATGTAATCTCAGTGGTGCCTAAGCCATCACCTCCACCCCCTGTTGCATCAAGACCACCAGCCCATTCACCGGTTTATGTTGCACAACCTCCTCCTCCTCCACCTTTCATAAGCAGCAGTGGTGGGTCTGGATCAAACTATTCAGGTGGTGAGCCACTTCCACCTCCTTCTCCTGGCATGTCTCTAGGCTTCTCAAAGAGCTCGTTTTCATATGAGGAGTTGGCACGGGCAACAGATGGTTTCTCTGATGCCAACCTCCTTGGACAAGGTGGATTTGGATATGTGCACAGAGGAATTCTCCCCAACGGTAAGGAGGTGGCTGTCAAGCAGCTAAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTTCAAGCTGAAGTTGAGATAATTAGCCGTGTTCATCACAAACATCTTGTTTCTTTGGTTGGATACTGTATCACTGGGTCCCAGAGGCTGCTTGTTTATGAATTTGTTCCCAACAATACATTGGAATTCCACTTACATGGAAGAGGGCGTCCCACCATGGATTGGCCCACAAGACTACGAATTGCCTTAGGAGCTGCAAAAGGACTGGCCTATCTTCATGAAGATTGTCATCCTAAGATTATCCATCGTGATATCAAATCTGCCAACATCCTTCTGGATTTTAAGTTTGAAGCAAAGGTTGCAGATTTTGGTCTTGCAAAGTTTTCTTCCGATGTCAATACTCATGTTTCTACTCGAGTGATGGGCACCTTTGGGTATCTGGCTCCAGAATATGCATCTAGTGGAAAACTTACAGAAAAATCAGATGTTTTCTCCTATGGAGTCATGCTTCTTGAGTTAATCACTGGACGGCGACCAGTTGATAAAACTCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTTTGCTCACTCGTGCTTTGGAAGAAGATAATTTTGATTCTCTGATAGACCCAAGGCTGGAGAATGAATATGATCCTAATGAGATGGCTAGAATGGTGGCATGTGCTGCGGCTAGCACACGTCATTCAGCAAAACGTCGACCAAGGATGAGCCAGGTTGTCCGTGCTCTGGAAGGAGATGTGTCTCTAGCAGATCTTAATGAAGGAATCAGACCTGGACACAGCACTATGTACAGTTCTCATGAAAGCTCAGATTATGATACTGCACAATACAGAGAAGACATGATAAAGTTCAGAAAAATGGCACTGGGAACTCAGGAGTATGCTGGCAGCAGTGAATACAGTGCAGCTACAAGTGAGTACGGTTTAAACCCATCTGGCTCAAGCAGTGAAGCGCAGAGCCGCCAAACCACCCGGGAAATGGAAATGAGAAGAATGAAGAACAGTCAAGGTTTCAGTGGAAGTTCCTGA 1458 0.4623 MAPYFMFLVMFKDDPYGGPPRQWQHNAPPPSDHVISVVPKPSPPPPVASRPPAHSPVYVAQPPPPPPFISSSGGSGSNYSGGEPLPPPSPGMSLGFSKSSFSYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGAAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDNFDSLIDPRLENEYDPNEMARMVACAAASTRHSAKRRPRMSQVVRALEGDVSLADLNEGIRPGHSTMYSSHESSDYDTAQYREDMIKFRKMALGTQEYAGSSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRRMKNSQGFSGSS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi129g00033 485 MobiDBLite consensus disorder prediction 34 70 - -
Sebi129g00033 485 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 78 448 IPR047117 -
Sebi129g00033 485 MobiDBLite consensus disorder prediction 442 465 - -
Sebi129g00033 485 MobiDBLite consensus disorder prediction 442 485 - -
Sebi129g00033 485 Pfam Protein tyrosine and serine/threonine kinase 118 384 IPR001245 GO:0004672|GO:0006468
Sebi129g00033 485 FunFam Proline-rich receptor-like protein kinase PERK1 189 397 - -
Sebi129g00033 485 ProSitePatterns Protein kinases ATP-binding region signature. 119 141 IPR017441 GO:0005524
Sebi129g00033 485 FunFam proline-rich receptor-like protein kinase PERK1 91 188 - -
Sebi129g00033 485 Gene3D Phosphorylase Kinase; domain 1 95 188 - -
Sebi129g00033 485 ProSiteProfiles Protein kinase domain profile. 113 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi129g00033 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Sebi129g00033 485 SMART serkin_6 113 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi129g00033 485 SUPERFAMILY Protein kinase-like (PK-like) 87 386 IPR011009 -
Sebi129g00033 485 Gene3D Transferase(Phosphotransferase) domain 1 189 396 - -
Sebi129g00033 485 MobiDBLite consensus disorder prediction 17 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi129g00033 Sebi-Chr129 1563395 1566334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi129g00033 68 468 Trihelix Transcription Factor Family AT1G70460 59.352 1.13e-163 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Sebi129g00033 PK_Tyr_Ser-Thr 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi129g00033 - - gmx:100781944 820.461