Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi128g00060 ATGCAGAAACGAAAGGCTGGAAGGAAGAAGTTCCAAGAGACTCGACACCCAATTTACAAAGGTGTGAGGCAGAGAAATGGGAAGTGGGTGTGTGAGCTACGACAACCTAACAACAAAACACGTGTTTGGCTTGGAACTTTTGCTCACCCTGACATGGCAGCTATAGCTTATGATGTTGCTGCTTTGGCTTTCAAAGGTGATGCTGCTTCCTTGAATTTCCCACAATCTGCTACCTCTTTGCCGCGCCTTAATTCTCGAACCTCTTCTATTAGAGCCATTCAGTTTGCGGCAATACAAGCCGCTGAGAAACACTTTTCTTGCATCCGTCATGATGCCAGTAGTGAGATTGTTCCCGCCAAGAATGATAACGGTTCGGGTGAGTTGTTGTCATTGGATTGCATGGGGATCAGGTCCGCGGAGGAAGATTCTGGAAGGTTCTTTTGGGATGAAGAGGAGGTGTTCAACATGCCGGTTTTGATAGACAGTTTGGCGGAAGGGTTGATTATCACACCGCCTGCCTTGCAGAGAGGATTCAATTGGGCGGGTGGAGAAACTACTATGGACTTGACTCTTTGGGGAAATTGA 585 0.4735 MQKRKAGRKKFQETRHPIYKGVRQRNGKWVCELRQPNNKTRVWLGTFAHPDMAAIAYDVAALAFKGDAASLNFPQSATSLPRLNSRTSSIRAIQFAAIQAAEKHFSCIRHDASSEIVPAKNDNGSGELLSLDCMGIRSAEEDSGRFFWDEEEVFNMPVLIDSLAEGLIITPPALQRGFNWAGGETTMDLTLWGN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi128g00060 194 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Sebi128g00060 194 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Sebi128g00060 194 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Sebi128g00060 194 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Sebi128g00060 194 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Sebi128g00060 194 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Sebi128g00060 194 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 192 IPR045277 GO:0003700
Sebi128g00060 194 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Sebi128g00060 194 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi128g00060 Sebi-Chr128 1072706 1073290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi128g00060 3 192 AP2-EREBP Transcription Factor Family AT4G25490 42.932 2.05e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi128g00060 AP2 2.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi128g00060 - - lja:Lj5g3v0712260.1 280.796