Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi128g00034 ATGGAGTGGAATGGGAGCACAAGACGCTTTGTTCCTAGAGCAGAGTCTTCCTTAAGCTTCCTCTACAACTACAACCATAACCCATATCCAGGAATGGAAATGAAACAACAAGCAACACTGATGGAGACACCTGCACCAATATTGGAAAAAATGAACCATGAGAAGAAGAAGCGATTAACAAATGACCAGCTTGACTCACTGGAGAGTAGTTTCCAGAAGGAGATAAAGTTGGACCCTGATAGGAAGATGAAGCTTGCTAAGGAGTTAGGCCTCCAGCCTCGCCAAATTGCTGTGGTGCAGGTTATGAAGTTAAAGGGGATGCTGAGAGAGCAAGGTTCTAGAACGCAACAAGTGTCAGCAGAAATCTCTGGTGAGGAAACAGTAGATCAAAGCACGTCAGAGGCTCTGCGTTGCTCAAACAGGGCGCGGGGAAAGATTCATCATTATCAGCAGAGTGAGGGAAACTGTTCTTTCACTAATACTCACATGGTCATGGAGGATTATAACACAGTTCCACTTATGCCCTATTGGCCTGGATTTCCTTCTTATCCTTAG 555 0.4505 MEWNGSTRRFVPRAESSLSFLYNYNHNPYPGMEMKQQATLMETPAPILEKMNHEKKKRLTNDQLDSLESSFQKEIKLDPDRKMKLAKELGLQPRQIAVVQVMKLKGMLREQGSRTQQVSAEISGEETVDQSTSEALRCSNRARGKIHHYQQSEGNCSFTNTHMVMEDYNTVPLMPYWPGFPSYP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi128g00034 184 CDD homeodomain 55 98 IPR001356 GO:0003677
Sebi128g00034 184 Gene3D - 49 98 - -
Sebi128g00034 184 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 98 IPR045224 GO:0003700
Sebi128g00034 184 SMART HOX_1 53 111 IPR001356 GO:0003677
Sebi128g00034 184 SUPERFAMILY Homeodomain-like 50 98 IPR009057 -
Sebi128g00034 184 ProSiteProfiles 'Homeobox' domain profile. 50 98 IPR001356 GO:0003677
Sebi128g00034 184 Pfam Homeodomain 55 98 IPR001356 GO:0003677
Sebi128g00034 184 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi128g00034 Sebi-Chr128 493033 495029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi128g00034 16 98 Homeobox Transcription Factor Family AT5G03790 48.958 2.32e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi128g00034 Homeodomain 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi128g00034 - - gmx:100778007 243.047