Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi128g00031 ATGGGGGACAACGCCGAAGACGACAGGACCGACAGCAGCGATTTCACCTCCGAGGACGAAGGCACCGAGGATTACCGCCGCGGCGGCTACCACGCCGTCCGAATCGGCGACACCTTCAACGCTGGTCGCTACGTCGTTCAGAGCAAGCTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCCTTCATTCTAGATATGTGGCCTTGAAAGTTCAAAAGAGTGCTCAGCATTACACCGAGGCAGCCATGGACGAGATAACCATTTTGCAACAGATTGCAGAGGGAGACCCGGATGATAAAAAATGTGTGGTCAAGCTTTTGGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTCTGCATGGTGTTTGAGTACCTTGGGGATAATCTCTTAACTCTTATTAAGTATTCCGATTATCGTGGATTGCCTATCAACATGGTTAAAGAGATATGCTTTCATATTCTGGTTGGATTAGATTATTTACACAAGCAGCTTTCTATCATACATACTGACTTGAAACCTGAAAACATCCTCCTCTTGTCAATGATAGATCCATCCAAGGATCCTAGAAAGTCTGGTGCTCCCCTTATTCTTCCCAATAGTAAAGATAAGACAGTGCTGGAGTCAGCAGCTGCAAAAGACACGAAAACAGCAAATGGGGATTTAATTAAGAATCATAAGAAAAAGATTAAAAGAAAAGCCAAGCAAGCAGCTCATGGATGTGCAGAGAAGGAAGCTTCTGAAGGAGTTGAGGGTAAACCTGAAACCTCTGGTGCTGTAGAATCATCTCCGAATGCAAGTTCTGCGAGAGAACAAGCTTCTAGTTCTGCTGGGACCAGTAGGTTATCAGATGCCGATAGAGCAAAGTCAAAAGAACAGAGCAATAAAAGAGGAAGCCGCTCAATGAGACAGAAACTGCTGGCTTCAGTTGATCTCAAGTGCAAGTTAGTTGACTTTGGTAATGCTTGCTGGACATATAAACAGTTTACAAATGATATCCAGACAAGACAATATCGGTGCCCAGAAGTGATCCTTGGATCAAAATATTCTACATCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCAACTGGAGATGTGTTATTTGATCCTCACAGTGGTGACAACTTTGATAGGGATGAGGACCACTTAGCACTAATGATGGAGCTTCTTGGAATGATGCCACGCAAGAGTCTGTGGATTATAATTCTCAGATTGCCACTAGGGGGCCGTTATTCCCGTGATTTCTTTAACAGATATGGTGATCTGAGGCACATCCGTCGGTTGCGATTCTGGCCACTAAATAAAGTCCTCATGGAGAAGTATGATTTTAGTGAGAAAGATGCAAGTGACATGACTGACTTTTTGGTTCCTATTCTTGACTTTGTTCCTGAGAAACGGCCTACCGCTGGTCAGTGTTTGCTACATCCATGGATGAATGCAGGTCCTCGTCTTTTAGAGCCATCTATGCCTCCTTCTAATCACAACCCTGCTGCTGAAACTGCTGTTATTTCCGACCAGAAGAAAAGGGACAAAGATGAGAGGGAGGCCATGGAAGCAGGAATGGGAAATATTGCTATCAATTCAGATTCTAAACCACTCATGCATTCTCCATCTAAGAAAGCTTTCCAGGGAAGCAGCCACAAGTAG 1671 0.4482 MGDNAEDDRTDSSDFTSEDEGTEDYRRGGYHAVRIGDTFNAGRYVVQSKLGWGHFSTVWLAWDTLHSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPRKSGAPLILPNSKDKTVLESAAAKDTKTANGDLIKNHKKKIKRKAKQAAHGCAEKEASEGVEGKPETSGAVESSPNASSAREQASSSAGTSRLSDADRAKSKEQSNKRGSRSMRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKSLWIIILRLPLGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEKDASDMTDFLVPILDFVPEKRPTAGQCLLHPWMNAGPRLLEPSMPPSNHNPAAETAVISDQKKRDKDEREAMEAGMGNIAINSDSKPLMHSPSKKAFQGSSHK 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi128g00031 556 MobiDBLite consensus disorder prediction 240 255 - -
Sebi128g00031 556 MobiDBLite consensus disorder prediction 288 303 - -
Sebi128g00031 556 Pfam Protein kinase domain 311 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi128g00031 556 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi128g00031 556 MobiDBLite consensus disorder prediction 219 306 - -
Sebi128g00031 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Sebi128g00031 556 Gene3D Transferase(Phosphotransferase) domain 1 127 487 - -
Sebi128g00031 556 SMART serkin_6 44 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi128g00031 556 CDD STKc_SRPK 33 486 - -
Sebi128g00031 556 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 11 514 - -
Sebi128g00031 556 MobiDBLite consensus disorder prediction 1 24 - -
Sebi128g00031 556 SUPERFAMILY Protein kinase-like (PK-like) 39 502 IPR011009 -
Sebi128g00031 556 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Sebi128g00031 556 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Sebi128g00031 556 MobiDBLite consensus disorder prediction 537 556 - -
Sebi128g00031 556 MobiDBLite consensus disorder prediction 497 556 - -
Sebi128g00031 556 ProSiteProfiles Protein kinase domain profile. 44 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi128g00031 556 FunFam CMGC/SRPK protein kinase 30 129 - -
Sebi128g00031 556 MobiDBLite consensus disorder prediction 262 287 - -
Sebi128g00031 556 FunFam Serine/threonine-protein kinase SRPK-like protein 308 486 - -
Sebi128g00031 556 MobiDBLite consensus disorder prediction 511 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi128g00031 Sebi-Chr128 465880 473554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi128g00031 10 539 EF-hand Containing Proteins AT5G22840 69.476 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Sebi128g00031 Pkinase 1.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi128g00031 K08832 - gmx:100810777 998.423