Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi127g00057 ATGTCTGAAGCAAAAGACCCGGCGATCAAGCTCTTCGGGAAGACGATCCCGCTTCCGGAGATCCAGGCCGGATCCGGAGACTCCGCCGAAGCTCCGCCTTCATCTTCTGGGGATGTTGTCGATGAGAGTGTTGATCAGAATCACGCTTCTTCCACCAACTCTTCGAGGGAGTCTCACACCAACGAGGATGCAAAAGAGCAAGAGATTGAGAAGGACACTTTGGGAGAAAAACCAACTGATGATAAAAAGGAAGATGGAGCCCCCACCCAACTATCAGAGGAGTTCACCAATCCAGATACAGCCTCTGGGACCGGTGAAGAATCTGTTACCCTGTCCACCGAGAGGGAGGCTACTACTACATTGAAAACTTCAAAGACTGAAGAAGAACAGGGTGAGACAAGTAAATCACAGGATAAGAACCTCAAAAAACCAGACAAAATACTGCCTTGTCCCCGCTGTAATAGCATGGAGACCAAGTTCTGCTACTATAATAATTACAATGTCAACCAACCCCGCCATTTCTGCAAGAATTGCCAGAGATACTGGACTGCTGGTGGAACCATGAGGAACGTACCTGTAGGTGCTGGTCGCAGGAAGAACAAAAGCTCTTCTTCTCACTACCGCCAGATCACTGTCTCTGAAGCATCACTCCAGAATACTCGGACAGACTTGCCAAATGGAGCTCATCATCCTTCCTTGAAGTGCAATGGTACAGTCCTTACCTTTGGATCTGATACACCCTTGTGTGAATCAATGGCTTCTGTTCTGAACCTTGCTGATAAAACAGTGCACAATTACCCAACAAATGGATTTCATAATCCTGAAGAACTAAGACTTCCTGTTCCCCATGCCAATGGAGAAAAAGGAGATGATCAATCCAATAAATCTTCTGTTACCTCCACAAAGTCAATTGAAGGTGCAAGCACCAACGGATCCCAAGAACAAACTATGCAGAATTGTCAGAGCTTCCGACCACAAGTTCCCTACTTTCCTGGGACCCCTTGGCCTTTCCCATGGAATCCAGTGCAGTGGAGCTCTCCAGTACCACCACCTGCTTTTTGCCCTCCAGGATTTGCCCTGCCATTTTATCCTGCAACAACTTATTGGGGTTGTACTGTGCCAGGCACATGGAACATCCCATGGATAGCTCAACCAACATCACCAAATGGTGCAGCCCCTAACTCTGGTCCTAACTCCCCAACTCTGGGTAAACATTCAAGGGAAGACAGTGTGCTCAAATCAAATGAGTCAGGTGGTGGGGATGGACATAGCAAAGAAAACAACAAAGAAAAGTGTCTGTGGATTCCAAAAACTTTGAGGATTGATGACTCAGGAGAAGCAGCAAAAAGCTCTATATTGACAAGTCTTGGGATAAAATATGATAAGGCTGACACAGTTCCTGGGAGAGGACTCTTTAAAGCATTCTCTTCAAAGAATGATGAAAAAAATCATTCAATGCAAGCCTCACCAGTCTTGCAGGCCAATCCAGCGGCATTGTCTAGGTCACTTAACTTTCATGAGACCTCATAA 1530 0.4634 MSEAKDPAIKLFGKTIPLPEIQAGSGDSAEAPPSSSGDVVDESVDQNHASSTNSSRESHTNEDAKEQEIEKDTLGEKPTDDKKEDGAPTQLSEEFTNPDTASGTGEESVTLSTEREATTTLKTSKTEEEQGETSKSQDKNLKKPDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRQITVSEASLQNTRTDLPNGAHHPSLKCNGTVLTFGSDTPLCESMASVLNLADKTVHNYPTNGFHNPEELRLPVPHANGEKGDDQSNKSSVTSTKSIEGASTNGSQEQTMQNCQSFRPQVPYFPGTPWPFPWNPVQWSSPVPPPAFCPPGFALPFYPATTYWGCTVPGTWNIPWIAQPTSPNGAAPNSGPNSPTLGKHSREDSVLKSNESGGGDGHSKENNKEKCLWIPKTLRIDDSGEAAKSSILTSLGIKYDKADTVPGRGLFKAFSSKNDEKNHSMQASPVLQANPAALSRSLNFHETS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi127g00057 509 ProSiteProfiles Zinc finger Dof-type profile. 148 202 IPR003851 GO:0003677|GO:0006355
Sebi127g00057 509 MobiDBLite consensus disorder prediction 406 429 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 477 509 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 90 119 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 269 319 - -
Sebi127g00057 509 PANTHER CYCLIC DOF FACTOR 2 1 509 IPR045174 GO:0003700|GO:0006355
Sebi127g00057 509 MobiDBLite consensus disorder prediction 58 89 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 384 405 - -
Sebi127g00057 509 Pfam Dof domain, zinc finger 145 202 IPR003851 GO:0003677|GO:0006355
Sebi127g00057 509 ProSitePatterns Zinc finger Dof-type signature. 150 186 IPR003851 GO:0003677|GO:0006355
Sebi127g00057 509 MobiDBLite consensus disorder prediction 481 509 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 193 217 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 291 319 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 384 429 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 120 146 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 197 217 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 1 146 - -
Sebi127g00057 509 MobiDBLite consensus disorder prediction 39 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi127g00057 Sebi-Chr127 1575967 1579042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi127g00057 6 509 C2C2-Dof Transcription Factor Family AT5G39660 46.038 2.21e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sebi127g00057 zf-Dof 3.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi127g00057 - - gmx:100788247 864.759